RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 OR6C76A6NM76 312 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 PLOD2O00469 737 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 UBFD1O14562 309 aaKnown RBP10.04□□□□□ -0.8
VPS53-207ENST00000570510 CLGNO14967 610 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 ADAM11O75078 769 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 IGKV3-11P04433 115 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 CTAGE8P0CG41 777 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 SRD5A1P18405 259 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 TBXA2RP21731 343 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 TLX1P31314 330 aaPredicted RBP10.04□□□□□ -0.8
VPS53-207ENST00000570510 STX2P32856 288 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 CASP3P42574 277 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 POU4F1Q01851 419 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 EXOC3L2Q2M3D2 409 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 C6orf52Q5T4I8 152 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 VWA1Q6PCB0 445 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 ABHD17CQ6PCB6 329 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 BHLHB9Q6PI77 547 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 ZNF474Q6S9Z5 364 aaPredicted RBP10.04□□□□□ -0.8
VPS53-207ENST00000570510 IGDCC3Q8IVU1 814 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 CTAGE4Q8IX94 777 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 ZBED8Q8IZ13 594 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 NKAPQ8N5F7 415 aaKnown RBP10.04□□□□□ -0.8
VPS53-207ENST00000570510 DOK4Q8TEW6 326 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 AKAP1Q92667 903 aaKnown RBP eCLIP10.04□□□□□ -0.8
VPS53-207ENST00000570510 TSPAN17Q96FV3 270 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 PLPPR2Q96GM1 343 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 TMEM41AQ96HV5 264 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 UCN2Q96RP3 112 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 CPNE1Q99829 537 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 MAPKAP1Q9BPZ7 522 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 MCMBPQ9BTE3 642 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 SLCO5A1Q9H2Y9 848 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 RHOJQ9H4E5 214 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 ACTR8Q9H981 624 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 PLAC1Q9HBJ0 212 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 FANCFQ9NPI8 374 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 PPANQ9NQ55 473 aaKnown RBP10.04□□□□□ -0.8
VPS53-207ENST00000570510 CLCF1Q9UBD9 225 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 FETUBQ9UGM5 382 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 CHMP2BQ9UQN3 213 aa10.04□□□□□ -0.8
VPS53-207ENST00000570510 SLC22A20A6NK97 555 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 HRKO00198 91 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 FGF17O60258 216 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 DLX3O60479 287 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 WDR47O94967 919 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 PLAUP00749 431 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 ALOX15P16050 662 aaPredicted RBP10.03□□□□□ -0.8
VPS53-207ENST00000570510 PPP3CBP16298 524 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 GABRB3P28472 473 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 PTPN6P29350 595 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 THBS2P35442 1172 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 CDKN1AP38936 164 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 STARP49675 285 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 CASP9P55211 416 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 RPS13P62277 151 aaKnown RBP10.03□□□□□ -0.8
VPS53-207ENST00000570510 CDKL1Q00532 357 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 SRSF2Q01130 221 aaKnown RBP10.03□□□□□ -0.8
VPS53-207ENST00000570510 GUCY2DQ02846 1103 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 FGFBP1Q14512 234 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 AP5B1Q2VPB7 878 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 C3orf62Q6ZUJ4 267 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 ADGRE4PQ86SQ3 457 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 ZC3HC1Q86WB0 502 aaKnown RBP10.03□□□□□ -0.8
VPS53-207ENST00000570510 WFDC8Q8IUA0 241 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 FBXO25Q8TCJ0 367 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 IGFBPL1Q8WX77 278 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 ROBO4Q8WZ75 1007 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 RIT1Q92963 219 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 RHBDF1Q96CC6 855 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 F2RL3Q96RI0 385 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 PELOQ9BRX2 385 aaKnown RBP10.03□□□□□ -0.8
VPS53-207ENST00000570510 CAPS2Q9BXY5 557 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 FUT8Q9BYC5 575 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 PLA2G12AQ9BZM1 189 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 TRIM31Q9BZY9 425 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 ALG2Q9H553 416 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 RPF2Q9H7B2 306 aaKnown RBP10.03□□□□□ -0.8
VPS53-207ENST00000570510 BARX1Q9HBU1 254 aaPredicted RBP10.03□□□□□ -0.8
VPS53-207ENST00000570510 TAS2R10Q9NYW0 307 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 KLRF1Q9NZS2 232 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 TXNDC16Q9P2K2 825 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 PROCRQ9UNN8 238 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 LIPT1Q9Y234 373 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 DLGAP4Q9Y2H0 992 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 ANK2Q01484 3957 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 FREM3P0C091 2139 aa10.03□□□□□ -0.8
VPS53-207ENST00000570510 LRRC14BA6NHZ5 514 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 FAM159BA6NKW6 160 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 GPRIN2O60269 458 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 CBR3O75828 277 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 TGM6O95932 706 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 LOXP28300 417 aaPredicted RBP10.02□□□□□ -0.81
VPS53-207ENST00000570510 CCKARP32238 428 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 PHBP35232 272 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 GP5P40197 560 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 SSR2P43308 183 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 HNMTP50135 292 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 PLTPP55058 493 aa10.02□□□□□ -0.81
VPS53-207ENST00000570510 C2orf54Q08AI8 447 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms