RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 KCNJ2P63252 427 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 ZNF763Q0D2J5 394 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 DUSP8Q13202 625 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 EXOSC7Q15024 291 aaKnown RBP18.66■□□□□ 0.58
CLK3-225ENST00000569063 RPS6KA2Q15349 733 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 CEBPEQ15744 281 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 IMPG1Q17R60 797 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 TRMT12Q53H54 448 aaKnown RBP18.66■□□□□ 0.58
CLK3-225ENST00000569063 TBCELQ5QJ74 424 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 TMEM64Q6YI46 380 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 CD163Q86VB7 1156 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 CCDC116Q8IYX3 515 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 OR5M3Q8NGP4 307 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.66■□□□□ 0.58
CLK3-225ENST00000569063 ZNF675Q8TD23 568 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 ERP27Q96DN0 273 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 SECISBP2Q96T21 854 aaKnown RBP18.66■□□□□ 0.58
CLK3-225ENST00000569063 TRMOQ9BU70 441 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 GATA5Q9BWX5 397 aaPredicted RBP18.66■□□□□ 0.58
CLK3-225ENST00000569063 ZFP64Q9NPA5 681 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 RRAGDQ9NQL2 400 aaPredicted RBP18.66■□□□□ 0.58
CLK3-225ENST00000569063 BCAP29Q9UHQ4 241 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 BOKQ9UMX3 212 aaPredicted RBP18.66■□□□□ 0.58
CLK3-225ENST00000569063 ENTPD4Q9Y227 616 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 CCL27Q9Y4X3 112 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 HRH3Q9Y5N1 445 aa18.66■□□□□ 0.58
CLK3-225ENST00000569063 GTF3C1Q12789 2109 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 NBPF19A0A087WUL8 3843 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 SUSD5O60279 629 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 CBX7O95931 251 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 DDCP20711 480 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 FBXW4P57775 412 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 SLC10A1Q14973 349 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 LTB4RQ15722 352 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 ZNF628Q5EBL2 1059 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 SP5Q6BEB4 398 aaPredicted RBP18.65■□□□□ 0.58
CLK3-225ENST00000569063 C3P1Q6ZMU1 363 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 TRILQ7L0X0 811 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 SRRM1Q8IYB3 904 aaKnown RBP18.65■□□□□ 0.58
CLK3-225ENST00000569063 SIMC1Q8NDZ2 872 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 OR52R1Q8NGF1 315 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 SPPL2AQ8TCT8 520 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 EXOSC8Q96B26 276 aaKnown RBP18.65■□□□□ 0.58
CLK3-225ENST00000569063 METTL2AQ96IZ6 378 aaKnown RBP18.65■□□□□ 0.58
CLK3-225ENST00000569063 NXF5Q9H1B4 397 aaKnown RBP18.65■□□□□ 0.58
CLK3-225ENST00000569063 SLC35C2Q9NQQ7 365 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 PRODH2Q9UF12 536 aa18.65■□□□□ 0.58
CLK3-225ENST00000569063 WBP11Q9Y2W2 641 aaKnown RBP18.65■□□□□ 0.58
CLK3-225ENST00000569063 ATP6AP2A0A1C7CYW4 349 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 LRRC3CA6NJW4 275 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 NPIPB8E9PQR5 432 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 ATP6AP2O75787 350 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 BCAS2O75934 225 aaPredicted RBP18.64■□□□□ 0.57
CLK3-225ENST00000569063 CELA3AP09093 270 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 PCSK2P16519 638 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 NAGAP17050 411 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 DRD5P21918 477 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 PRPH2P23942 346 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 ABCD3P28288 659 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 EMDP50402 254 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 DCAF7P61962 342 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 MRPS35P82673 323 aaKnown RBP18.64■□□□□ 0.57
CLK3-225ENST00000569063 EMC4Q5J8M3 183 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 CLEC6AQ6EIG7 209 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 RNF165Q6ZSG1 346 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 NCCRP1Q6ZVX7 275 aaPredicted RBP18.64■□□□□ 0.57
CLK3-225ENST00000569063 HOMEZQ8IX15 550 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 MREGQ8N565 214 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 DIO2Q92813 273 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 HSPBAP1Q96EW2 488 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 LCORQ96JN0 433 aaPredicted RBP18.64■□□□□ 0.57
CLK3-225ENST00000569063 DOHHQ9BU89 302 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 TMEM109Q9BVC6 243 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 ITPAQ9BY32 194 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 ANGPTL4Q9BY76 406 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 TP63Q9H3D4 680 aaPredicted RBP18.64■□□□□ 0.57
CLK3-225ENST00000569063 ZNF703Q9H7S9 590 aaPredicted RBP18.64■□□□□ 0.57
CLK3-225ENST00000569063 PFDN4Q9NQP4 134 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 GIMAP4Q9NUV9 329 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 QPCTLQ9NXS2 382 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 TAS2R7Q9NYW3 318 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.64■□□□□ 0.57
CLK3-225ENST00000569063 LIPGQ9Y5X9 500 aa18.64■□□□□ 0.57
CLK3-225ENST00000569063 V9GYY5 206 aaPredicted RBP18.64■□□□□ 0.57
CLK3-225ENST00000569063 NCOA6Q14686 2063 aaPredicted RBP18.64■□□□□ 0.57
CLK3-225ENST00000569063 SLC28A1O00337 649 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 AQP7O14520 342 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 BCKDKO14874 412 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 AZIN1O14977 448 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 ACOX3O15254 700 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 HCN1O60741 890 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 TRIM3O75382 744 aaPredicted RBP18.63■□□□□ 0.57
CLK3-225ENST00000569063 SNX4O95219 450 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 RFPL3SP0C7P2 107 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 ALDH3A1P30838 453 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 MPIP34949 423 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 PPICP45877 212 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 RPP38P78345 283 aaKnown RBP18.63■□□□□ 0.57
CLK3-225ENST00000569063 C2orf80Q0P641 193 aa18.63■□□□□ 0.57
CLK3-225ENST00000569063 KIAA0040Q15053 153 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms