RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TMEM200AQ86VY9 491 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TGIF2LXQ8IUE1 241 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 IZUMO1Q8IYV9 350 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ZNF786Q8N393 782 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SPATA6LQ8N4H0 392 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ZNF561Q8N587 486 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ARRDC1Q8N5I2 433 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SLC25A41Q8N5S1 370 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 POMGNT2Q8NAT1 580 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 CHDHQ8NE62 594 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 OR9A2Q8NGT5 310 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 OR2T34Q8NGX1 318 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 OR2T3Q8NH03 318 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 DNAJB14Q8TBM8 379 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 HASPINQ8TF76 798 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ADAMTS14Q8WXS8 1223 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 LRTOMTQ8WZ04 291 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 RSC1A1Q92681 617 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TMBIM1Q969X1 311 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SPSB4Q96A44 273 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 VOPP1Q96AW1 172 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 S100PBPQ96BU1 408 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 NARS2Q96I59 477 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 SLC45A3Q96JT2 553 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 FAM210BQ96KR6 192 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SFXN2Q96NB2 322 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ZNF599Q96NL3 588 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MEIS3Q99687 375 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MAP3K3Q99759 626 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 WDR77Q9BQA1 342 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 KATNB1Q9BVA0 655 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 YTHDF1Q9BYJ9 559 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 CCDC90BQ9GZT6 254 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 NAA50Q9GZZ1 169 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 OR10A4Q9H209 315 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 POLR1BQ9H9Y6 1135 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SMURF2Q9HAU4 748 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 VAT1LQ9HCJ6 419 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ITM2CQ9NQX7 267 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 SIRT7Q9NRC8 400 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 GKN1Q9NS71 199 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 FAM212BQ9NTI7 297 aaPredicted RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 ZFP57Q9NU63 452 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 OLAHQ9NV23 265 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TMLHEQ9NVH6 421 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 LYARQ9NX58 379 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 FBXL12Q9NXK8 326 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 TAS2R9Q9NYW1 312 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 PTTG3PQ9NZH4 202 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 COL20A1Q9P218 1284 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 ANAPC2Q9UJX6 822 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MKLN1Q9UL63 735 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 RPH3ALQ9UNE2 315 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 AURKCQ9UQB9 309 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 RNF24Q9Y225 148 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 NCKAP1Q9Y2A7 1128 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 MRPS2Q9Y399 296 aaKnown RBP3.08□□□□□ -1.92
VPS35-208ENST00000568612 DISP2A7MBM2 1401 aa3.08□□□□□ -1.92
VPS35-208ENST00000568612 RGPD1P0DJD0 1748 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 KIAA1551Q9HCM1 1747 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 KAT6AQ92794 2004 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 LOC102723971A0A1B0GUV8 181 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PLSCR5A0PG75 271 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MEX3AA1L020 520 aaKnown RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 METTL21EPA6NDL7 271 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 C5orf51A6NDU8 294 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 BTBD17A6NE02 478 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SAC3D1A6NKF1 404 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PP2D1A8MPX8 630 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 BTNL10A8MVZ5 291 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 A8MXK9 166 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 NPIPA2E9PIF3 369 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 H0Y8G0 127 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TMEM189-UBE2V1I3L0A0 370 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PYCARD-AS1I3L0S3 204 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 RAB27BO00194 218 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 FCHO1O14526 889 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MEIS2O14770 477 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TPP1O14773 563 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ZNF263O14978 683 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 EIF3DO15371 548 aaKnown RBP eCLIP3.07□□□□□ -1.92
VPS35-208ENST00000568612 DLEU1O43261 78 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 LIASO43766 372 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 FAM189A1O60320 539 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 SELENOFO60613 162 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MITFO75030 526 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 UGT2B11O75310 529 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PMPCBO75439 489 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ZNF821O75541 412 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 CREG1O75629 220 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 BEST1O76090 585 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 STARD3NLO95772 234 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ANGPTL1O95841 491 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 TBX18O95935 607 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 MT-CYBP00156 380 aaPredicted RBP3.07□□□□□ -1.92
VPS35-208ENST00000568612 F10P00742 488 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 IFNA7P01567 189 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 C9P02748 559 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 PRKCGP05129 697 aa3.07□□□□□ -1.92
VPS35-208ENST00000568612 ALPLP05186 524 aa3.07□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms