RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 OC90Q02509 493 aaPredicted RBP16■□□□□ 0.15
CLN3-217ENST00000565354 PTGR1Q14914 329 aa16■□□□□ 0.15
CLN3-217ENST00000565354 HLA-DQA1Q5Y7H0 255 aa16■□□□□ 0.15
CLN3-217ENST00000565354 ANKRD26P1Q6NSI1 321 aa16■□□□□ 0.15
CLN3-217ENST00000565354 Q6ZS92 163 aa16■□□□□ 0.15
CLN3-217ENST00000565354 LRRC34Q8IZ02 419 aa16■□□□□ 0.15
CLN3-217ENST00000565354 LGI4Q8N135 537 aa16■□□□□ 0.15
CLN3-217ENST00000565354 ADCY4Q8NFM4 1077 aa16■□□□□ 0.15
CLN3-217ENST00000565354 ZFP28Q8NHY6 868 aa16■□□□□ 0.15
CLN3-217ENST00000565354 SUN3Q8TAQ9 357 aa16■□□□□ 0.15
CLN3-217ENST00000565354 MTERF3Q96E29 417 aa16■□□□□ 0.15
CLN3-217ENST00000565354 ZNF681Q96N22 645 aa16■□□□□ 0.15
CLN3-217ENST00000565354 GAL3ST4Q96RP7 486 aa16■□□□□ 0.15
CLN3-217ENST00000565354 WDR55Q9H6Y2 383 aaPredicted RBP16■□□□□ 0.15
CLN3-217ENST00000565354 AGPAT4Q9NRZ5 378 aa16■□□□□ 0.15
CLN3-217ENST00000565354 ZNF223Q9UK11 482 aaPredicted RBP16■□□□□ 0.15
CLN3-217ENST00000565354 MAPRE3Q9UPY8 281 aa16■□□□□ 0.15
CLN3-217ENST00000565354 PKDREJQ9NTG1 2253 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 GABRR3A8MPY1 467 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 HRKO00198 91 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 SCAMP2O15127 329 aaKnown RBP15.99■□□□□ 0.15
CLN3-217ENST00000565354 LRRTM2O43300 516 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 WDPCPO95876 746 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 CT62P0C5K7 136 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 G6PDP11413 515 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 SSTR4P31391 388 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 PTGER1P34995 402 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 GPC1P35052 558 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 RNF4P78317 190 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 DUSP2Q05923 314 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 LTB4RQ15722 352 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 PRICKLE4Q2TBC4 344 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 SP5Q6BEB4 398 aaPredicted RBP15.99■□□□□ 0.15
CLN3-217ENST00000565354 MYO7BQ6PIF6 2116 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 FAM111BQ6SJ93 734 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 IGFL2Q6UWQ7 119 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 ACAD11Q709F0 780 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 LARP4Q71RC2 724 aaKnown RBP eCLIP15.99■□□□□ 0.151e-6■□□□□ 8.2
CLN3-217ENST00000565354 SPATA19Q7Z5L4 167 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 MCEMP1Q8IX19 187 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 TMEM156Q8N614 296 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 OR9A2Q8NGT5 310 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 OR8K3Q8NH51 312 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 UTP23Q9BRU9 249 aaKnown RBP15.99■□□□□ 0.15
CLN3-217ENST00000565354 DPY30Q9C005 99 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 LIN28AQ9H9Z2 209 aaKnown RBP15.99■□□□□ 0.15
CLN3-217ENST00000565354 ATAD3AQ9NVI7 634 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 ASIC5Q9NY37 505 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 TAS2R7Q9NYW3 318 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 MAT2BQ9NZL9 334 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 CFL2Q9Y281 166 aa15.99■□□□□ 0.15
CLN3-217ENST00000565354 OR5H15A6NDH6 313 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 OR6C76A6NM76 312 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 MYO1GB0I1T2 1018 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 WWP2O00308 870 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 PRKNO60260 465 aaPredicted RBP15.98■□□□□ 0.15
CLN3-217ENST00000565354 TBX19O60806 448 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 IGKV3-11P04433 115 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 PRPS1L1P21108 318 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 MLF1P58340 268 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 MAP4K2Q12851 820 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 RPS6KA2Q15349 733 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 SLC9B1Q4ZJI4 515 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 CPTPQ5TA50 214 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 OR7G1Q8NGA0 311 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 HAS2Q92819 552 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 KAT2AQ92830 837 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 NPAS2Q99743 824 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 RNF32Q9H0A6 362 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 OR10A5Q9H207 317 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 ANKRD10Q9NXR5 420 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 EXO1Q9UQ84 846 aaKnown RBP15.98■□□□□ 0.15
CLN3-217ENST00000565354 YARS2Q9Y2Z4 477 aaKnown RBP15.98■□□□□ 0.15
CLN3-217ENST00000565354 DCHS2Q6V1P9 2916 aa15.98■□□□□ 0.15
CLN3-217ENST00000565354 POLR3GO15318 223 aaPredicted RBP15.97■□□□□ 0.15
CLN3-217ENST00000565354 MAN1A2O60476 641 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 ZG16O60844 167 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 ITGA10O75578 1167 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 BCAS2O75934 225 aaPredicted RBP15.97■□□□□ 0.15
CLN3-217ENST00000565354 PCSK2P16519 638 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 ST13P50502 369 aaKnown RBP15.97■□□□□ 0.15
CLN3-217ENST00000565354 SSR4P51571 173 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 DIO3P55073 304 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 MANFP55145 182 aaKnown RBP15.97■□□□□ 0.15
CLN3-217ENST00000565354 CLDN8P56748 225 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 SLC37A1P57057 533 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 MRPS35P82673 323 aaKnown RBP15.97■□□□□ 0.15
CLN3-217ENST00000565354 FUT7Q11130 342 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 HSPB3Q12988 150 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 PDE7AQ13946 482 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 EXOSC7Q15024 291 aaKnown RBP15.97■□□□□ 0.15
CLN3-217ENST00000565354 TLR1Q15399 786 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 CEBPEQ15744 281 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 ZNF385BQ569K4 471 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 OGFOD2Q6N063 350 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 RGS9BPQ6ZS82 235 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 C9orf40Q8IXQ3 194 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 HORMAD2Q8N7B1 307 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 OR7A2PQ8NGA2 310 aa15.97■□□□□ 0.15
CLN3-217ENST00000565354 CEP70Q8NHQ1 597 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms