RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 NXF5Q9H1B4 397 aaKnown RBP15.66■□□□□ 0.1
CLN3-216ENST00000565316 CXXC4Q9H2H0 198 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 CRIM1Q9NZV1 1036 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 FETUBQ9UGM5 382 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 ZNF639Q9UID6 485 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 DTX4Q9Y2E6 619 aa15.66■□□□□ 0.1
CLN3-216ENST00000565316 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.66■□□□□ 0.1
CLN3-216ENST00000565316 ARHGAP21Q5T5U3 1957 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 A0A1B0GTL3 188 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 C1orf226A1L170 272 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 CDH16O75309 829 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 GUCY1B2O75343 617 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 PPM1BO75688 479 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 ATP1B1P05026 303 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 INHBAP08476 426 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 NT5EP21589 574 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 SOX18P35713 384 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 SERPINB9P50453 376 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 MAPK12P53778 367 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 CKAP4Q07065 602 aaKnown RBP15.65■□□□□ 0.1
CLN3-216ENST00000565316 GALNT1Q10472 559 aaPredicted RBP15.65■□□□□ 0.1
CLN3-216ENST00000565316 SF3B4Q15427 424 aaKnown RBP eCLIP15.65■□□□□ 0.12e-7■■■■□ 24.8
CLN3-216ENST00000565316 PRICKLE4Q2TBC4 344 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 C6orf163Q5TEZ5 329 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 NSUN5P2Q63ZY6 315 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 PRR22Q8IZ63 422 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 VWA5B2Q8N398 1253 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 OR4F6Q8NGB9 312 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 ZNF483Q8TF39 744 aaPredicted RBP15.65■□□□□ 0.1
CLN3-216ENST00000565316 RNASE6Q93091 150 aaKnown RBP15.65■□□□□ 0.1
CLN3-216ENST00000565316 HGDQ93099 445 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 FOXC2Q99958 501 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 MRPL57Q9BQC6 102 aaKnown RBP15.65■□□□□ 0.1
CLN3-216ENST00000565316 ELOVL6Q9H5J4 265 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 BRF2Q9HAW0 419 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 RASSF1Q9NS23 344 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 MAT2BQ9NZL9 334 aa15.65■□□□□ 0.1
CLN3-216ENST00000565316 ZNF469Q96JG9 3925 aaPredicted RBP15.64■□□□□ 0.1
CLN3-216ENST00000565316 CD8B2A6NJW9 211 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 PPP6CO00743 305 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 OTCP00480 354 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 SBK3P0C264 359 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 BMP7P18075 431 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 BMP5P22003 454 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 PTPN6P29350 595 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 UQCRC1P31930 480 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 MASP1P48740 699 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 SNTB1Q13884 538 aaKnown RBP15.64■□□□□ 0.09
CLN3-216ENST00000565316 EIPR1Q53HC9 387 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 SGO1Q5FBB7 561 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 LETMD1Q6P1Q0 360 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 NUP54Q7Z3B4 507 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 TMEM151AQ8N4L1 468 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 FAM222BQ8WU58 562 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 TM4SF18Q96CE8 201 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 CTHRC1Q96CG8 243 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 HSPBAP1Q96EW2 488 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 WDYHV1Q96HA8 205 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 PAFAH2Q99487 392 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 UGT2B28Q9BY64 529 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 POLDIP3Q9BY77 421 aaKnown RBP15.64■□□□□ 0.09
CLN3-216ENST00000565316 TSPYL1Q9H0U9 437 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 CDC42EP4Q9H3Q1 356 aaKnown RBP15.64■□□□□ 0.09
CLN3-216ENST00000565316 FARSBQ9NSD9 589 aaKnown RBP15.64■□□□□ 0.09
CLN3-216ENST00000565316 MTRF1LQ9UGC7 380 aaKnown RBP15.64■□□□□ 0.09
CLN3-216ENST00000565316 FOXD3Q9UJU5 478 aaPredicted RBP15.64■□□□□ 0.09
CLN3-216ENST00000565316 ZNF180Q9UJW8 692 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 SLC12A4Q9UP95 1085 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 CFL2Q9Y281 166 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 SLC6A5Q9Y345 797 aa15.64■□□□□ 0.09
CLN3-216ENST00000565316 FREM3P0C091 2139 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 GOLGA6L10A6NI86 522 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 ACOX3O15254 700 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 KRT38O76015 456 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 CBX7O95931 251 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 PDYNP01213 254 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 IL2RAP01589 272 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 CSNK2A2P19784 350 aaPredicted RBP15.63■□□□□ 0.09
CLN3-216ENST00000565316 CNTFP26441 200 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 ZNF136P52737 540 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 WNT3P56703 355 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 SNTA1Q13424 505 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 DCST1Q5T197 706 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 SLC30A6Q6NXT4 461 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 FAM111BQ6SJ93 734 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 RPS27LQ71UM5 84 aaKnown RBP15.63■□□□□ 0.09
CLN3-216ENST00000565316 TAOK1Q7L7X3 1001 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 MMP21Q8N119 569 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 DCAKDQ8WVC6 231 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 LRRC46Q96FV0 321 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 LCORQ96JN0 433 aaPredicted RBP15.63■□□□□ 0.09
CLN3-216ENST00000565316 ZNF681Q96N22 645 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 GPATCH1Q9BRR8 931 aaKnown RBP15.63■□□□□ 0.09
CLN3-216ENST00000565316 TMUB1Q9BVT8 246 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 ITPAQ9BY32 194 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 MRPL46Q9H2W6 279 aaKnown RBP15.63■□□□□ 0.09
CLN3-216ENST00000565316 CALHM2Q9HA72 323 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 ST6GALNAC2Q9UJ37 374 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 ZNF225Q9UK10 706 aa15.63■□□□□ 0.09
CLN3-216ENST00000565316 PSME2Q9UL46 239 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms