RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 NSFP46459 744 aaKnown RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 KCNJ3P48549 501 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 RAB11AP62491 216 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 RPS15P62841 145 aaKnown RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 GPC5P78333 572 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 IFITM2Q01629 132 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 CHRNB3Q05901 458 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 IL18R1Q13478 541 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 NAE1Q13564 534 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 TFDP1Q14186 410 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 MED22Q15528 200 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 RAB11BQ15907 218 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 PTGISQ16647 500 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 C5orf64Q2M2E5 130 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 LRRC24Q50LG9 513 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 PRAMEF5Q5TYX0 476 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ATF7IP2Q5U623 682 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 PRAMEF6Q5VXH4 476 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 KRT39Q6A163 491 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 FAM199XQ6PEV8 388 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 INO80CQ6PI98 192 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 METTL7BQ6UX53 244 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 LRRC74BQ6ZQY2 392 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 PID1Q7Z2X4 250 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 KMT5CQ86Y97 462 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ECHDC2Q86YB7 292 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ADHFE1Q8IWW8 467 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.79□□□□□ -1.64
VPS35-205ENST00000563984 FAM86B1Q8N7N1 296 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 UXS1Q8NBZ7 420 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 FBXL13Q8NEE6 735 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 FAM83FQ8NEG4 500 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 OR10H4Q8NGA5 316 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 OR13C9Q8NGT0 318 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 OR6Y1Q8NGX8 325 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 PRSS3P2Q8NHM4 247 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 MAFAQ8NHW3 353 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 ACTL9Q8TC94 416 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 MAP4K1Q92918 833 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 PSMG2Q969U7 264 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 CCDC124Q96CT7 223 aaKnown RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 SLC41A3Q96GZ6 507 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 MBOAT7Q96N66 472 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 WFIKKN1Q96NZ8 548 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 SEPT5Q99719 369 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 HSD17B14Q9BPX1 270 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 PIGQQ9BRB3 760 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 SYT17Q9BSW7 474 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 MND1Q9BWT6 205 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 NPLQ9BXD5 320 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 GLIS2Q9BZE0 524 aaPredicted RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 TRIM9Q9C026 710 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 NMUR2Q9GZQ4 415 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 IL22Q9GZX6 179 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 SLITRK2Q9H156 845 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 HIPK2Q9H2X6 1198 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 NXF3Q9H4D5 531 aaKnown RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 RPF1Q9H9Y2 349 aaKnown RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 MAGEF1Q9HAY2 307 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 CSNK1G1Q9HCP0 422 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 ABCC13Q9NSE7 274 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 DDX19AQ9NUU7 478 aaKnown RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 GTSE1Q9NYZ3 720 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 CCDC59Q9P031 241 aaKnown RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 GUCA1BQ9UMX6 200 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 RPL26L1Q9UNX3 145 aaKnown RBP4.79□□□□□ -1.64
VPS35-205ENST00000563984 TP53TG5Q9Y2B4 290 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 SLC27A6Q9Y2P4 619 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 WIF1Q9Y5W5 379 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 MYOM3Q5VTT5 1437 aa4.79□□□□□ -1.64
VPS35-205ENST00000563984 UMODL1Q5DID0 1318 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 MROH7Q68CQ1 1323 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 PRDM15P57071 1507 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 CLASP1Q7Z460 1538 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 MAGI1Q96QZ7 1491 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 CLEC18AA5D8T8 446 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 NPIPB15A6NHN6 443 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 LIPT2A6NK58 231 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 OR2AG2A6NM03 316 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 MAGEB17A8MXT2 336 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 BTBD18B2RXH4 712 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 E5RJQ4 531 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 MAGEB2O15479 319 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 PAPSS1O43252 624 aaPredicted RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 ZNF264O43296 627 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 SGCEO43556 437 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 RNF13O43567 381 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 BUD23O43709 281 aaKnown RBP4.78□□□□□ -1.64
VPS35-205ENST00000563984 PRKYO43930 277 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 TOM1O60784 492 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 HUS1O60921 280 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ACTL6BO94805 426 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 SOX30O94993 753 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 ZWINTO95229 277 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 FAM107AO95990 144 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 IGHV2-70P01814 119 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 KLKB1P03952 638 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 PROS1P07225 676 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 GIMD1P0DJR0 217 aa4.78□□□□□ -1.64
VPS35-205ENST00000563984 CTSAP10619 480 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms