RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 WIPI2Q9Y4P8 454 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 DYNC1LI1Q9Y6G9 523 aaKnown RBP1.36□□□□□ -2.19
USP3-209ENST00000558925 RNF215Q9Y6U7 377 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 SALL1Q9NSC2 1324 aa1.36□□□□□ -2.19
USP3-209ENST00000558925 PARD3Q8TEW0 1356 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 NCAPD2Q15021 1401 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 PTPRUQ92729 1446 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 TEX48A0A1B0GUV7 120 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ZSCAN5CA6NGD5 496 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 LRRC30A6NM36 301 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 SLCO1B7G3V0H7 640 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 NDC80O14777 642 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CPLX1O14810 134 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 IDH3BO43837 385 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 EFNA2O43921 213 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 NOL3O60936 208 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 SDC3O75056 442 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 MTRF1O75570 445 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 NEBLO76041 1014 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 SORBS2O94875 1100 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 OR4F21O95013 312 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 KRT6BP04259 564 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 PCCBP05166 539 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 APRTP07741 180 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ADORA3P0DMS8 318 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CALCBP10092 127 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CLUP10909 449 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 EPB41P11171 864 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 FOSL2P15408 326 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 DRD5P21918 477 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ANOS1P23352 680 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 PTPN6P29350 595 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CYLC1P35663 651 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 SOX6P35712 828 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 MATKP42679 507 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 BRCC3P46736 316 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 HTR5AP47898 357 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 IFNAR2P48551 515 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 SLC1A6P48664 564 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 KRT6CP48668 564 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 GSK3BP49841 420 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CRIP2P52943 208 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 ATP12AP54707 1039 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 GSCP56915 257 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 HAND2P61296 217 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 NUCB2P80303 420 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CYCSP99999 105 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 FKBP3Q00688 224 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 CNTN2Q02246 1040 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 SRYQ05066 204 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 PDZK1IP1Q13113 114 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 SNTB2Q13425 540 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 ZNF146Q15072 292 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 SIX1Q15475 284 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 TAF7Q15545 349 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 CAMK4Q16566 473 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 TMEM30BQ3MIR4 351 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 MOGAT2Q3SYC2 334 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ANKDD1AQ495B1 522 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ACSF3Q4G176 576 aaPredicted RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 TMEM41BQ5BJD5 291 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 WLSQ5T9L3 541 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CES3Q6UWW8 571 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CWC27Q6UX04 472 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 ZNF562Q6V9R5 426 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 C3P1Q6ZMU1 363 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 NUFIP2Q7Z417 695 aaKnown RBP1.35□□□□□ -2.19
USP3-209ENST00000558925 PPP1R42Q7Z4L9 355 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 P4HA3Q7Z4N8 544 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 GOLGA7Q7Z5G4 137 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 LHFPL4Q7Z7J7 247 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 LUZP1Q86V48 1076 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ZFAND4Q86XD8 727 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 LMNTD2Q8IXW0 634 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 EFCAB13Q8IY85 973 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CCDC36Q8IYA8 594 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 TBC1D21Q8IYX1 336 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 GCNT2Q8N0V5 402 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 PYROXD2Q8N2H3 581 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CENPSQ8N2Z9 138 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 GVQW1Q8N7I0 195 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ZNF614Q8N883 585 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 FADS6Q8N9I5 356 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ICA1LQ8NDH6 482 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 GMCL1P1Q8NEA9 526 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 NUP37Q8NFH4 326 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 SPPL2AQ8TCT8 520 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 MIPOL1Q8TD10 442 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 CHPT1Q8WUD6 406 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 THRSPQ92748 146 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 TAF15Q92804 592 aaKnown RBP eCLIP1.35□□□□□ -2.19
USP3-209ENST00000558925 OSTF1Q92882 214 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 LHX4Q969G2 390 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 NCLNQ969V3 563 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 ADIPOR1Q96A54 375 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 BIRC7Q96CA5 298 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 NTNG2Q96CW9 530 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 MOCOSQ96EN8 888 aa1.35□□□□□ -2.19
USP3-209ENST00000558925 RBM18Q96H35 190 aaKnown RBP1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms