RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 NUS1Q96E22 293 aa2.56□□□□□ -2
VPS13C-207ENST00000558919 JAKMIP1Q96N16 626 aaKnown RBP2.56□□□□□ -2
VPS13C-207ENST00000558919 LINC00167Q96N53 147 aa2.56□□□□□ -2
VPS13C-207ENST00000558919 CASD1Q96PB1 797 aa2.56□□□□□ -2
VPS13C-207ENST00000558919 FUT8Q9BYC5 575 aa2.56□□□□□ -2
VPS13C-207ENST00000558919 IKZF5Q9H5V7 419 aa2.56□□□□□ -2
VPS13C-207ENST00000558919 IL1RAPL2Q9NP60 686 aa2.56□□□□□ -2
VPS13C-207ENST00000558919 TRPC4Q9UBN4 977 aa2.56□□□□□ -2
VPS13C-207ENST00000558919 ZFP37Q9Y6Q3 630 aaPredicted RBP2.56□□□□□ -2
VPS13C-207ENST00000558919 SYNJ2O15056 1496 aa2.56□□□□□ -2
VPS13C-207ENST00000558919 EPOPA6NHQ4 379 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 SH2D1BO14796 132 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 TYROBPO43914 113 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 GMNNO75496 209 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 SLC35E2P0CK97 266 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 SAA4P35542 130 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 TRIM23P36406 574 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 ACADSBP45954 432 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 ARHGDIBP52566 201 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 VCPP55072 806 aaKnown RBP2.55□□□□□ -2
VPS13C-207ENST00000558919 HERV-K104P63124 156 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 CD47Q08722 323 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 CD226Q15762 336 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 HKDC1Q2TB90 917 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 AARDQ4LEZ3 155 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 SEL1L2Q5TEA6 688 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 Q6ZVH6 145 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 APOBEC3FQ8IUX4 373 aaKnown RBP2.55□□□□□ -2
VPS13C-207ENST00000558919 FAM122AQ96E09 287 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 VSIG2Q96IQ7 327 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 CPXM1Q96SM3 734 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 OSBPL8Q9BZF1 889 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 DCLRE1BQ9H816 532 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 NRN1Q9NPD7 142 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 CENPMQ9NSP4 180 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 STX8Q9UNK0 236 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 SLC9A8Q9Y2E8 581 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 RNF115Q9Y4L5 304 aa2.55□□□□□ -2
VPS13C-207ENST00000558919 A0A1W2PRQ8 180 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 FRG2CA6NGY1 282 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 SLC28A1O00337 649 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 ARPC1BO15143 372 aaKnown RBP2.54□□□□□ -2
VPS13C-207ENST00000558919 REC8O95072 547 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 XCR1P46094 333 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 OVGP1Q12889 678 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 ASAH1Q13510 395 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 RCN2Q14257 317 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 SLMAPQ14BN4 828 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 EXOSC7Q15024 291 aaKnown RBP2.54□□□□□ -2
VPS13C-207ENST00000558919 QRICH1Q2TAL8 776 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 IFI44LQ53G44 452 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 B3GLCTQ6Y288 498 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 FBXO16Q8IX29 292 aaPredicted RBP2.54□□□□□ -2
VPS13C-207ENST00000558919 OR13F1Q8NGS4 319 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 LINC01006Q8NI28 216 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 U2AF1L4Q8WU68 220 aaKnown RBP2.54□□□□□ -2
VPS13C-207ENST00000558919 BCL2L2Q92843 193 aaPredicted RBP2.54□□□□□ -2
VPS13C-207ENST00000558919 RAB39BQ96DA2 213 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 MAGEB18Q96M61 343 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 JPH2Q9BR39 696 aaPredicted RBP2.54□□□□□ -2
VPS13C-207ENST00000558919 DPM3Q9P2X0 92 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 ERVK-18Q9QC07 812 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 NTNG1Q9Y2I2 539 aa2.54□□□□□ -2
VPS13C-207ENST00000558919 RAI1Q7Z5J4 1906 aaPredicted RBP2.54□□□□□ -2
VPS13C-207ENST00000558919 PTPRUQ92729 1446 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 LRRD1A4D1F6 860 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 G3V3Y1 287 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 EI24O14681 340 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 NUDT21O43809 227 aaKnown RBP2.53□□□□□ -2
VPS13C-207ENST00000558919 PDE5AO76074 875 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 TGDSO95455 350 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 APBB3O95704 486 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 APRTP07741 180 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 CT45A10P0DMU9 189 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 FERP16591 822 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 ELK1P19419 428 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 ATP5DP30049 168 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 MAT2AP31153 395 aaKnown RBP2.53□□□□□ -2
VPS13C-207ENST00000558919 TNNT3P45378 269 aaPredicted RBP2.53□□□□□ -2
VPS13C-207ENST00000558919 SMSP52788 366 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 ZNF85Q03923 595 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 ZNF33BQ06732 778 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 SGCBQ16585 318 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 HERC4Q5GLZ8 1057 aaPredicted RBP2.53□□□□□ -2
VPS13C-207ENST00000558919 TCHHL1Q5QJ38 904 aaPredicted RBP2.53□□□□□ -2
VPS13C-207ENST00000558919 SLC22A10Q63ZE4 541 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 HIST2H2AA3Q6FI13 130 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 ATRAIDQ6UW56 229 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 ERICH1Q86X53 443 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 GPR137Q96N19 417 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 KIR2DL4Q99706 377 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 MRPL9Q9BYD2 267 aaKnown RBP2.53□□□□□ -2
VPS13C-207ENST00000558919 ESM1Q9NQ30 184 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 ZCCHC3Q9NUD5 404 aaKnown RBP2.53□□□□□ -2
VPS13C-207ENST00000558919 TMEM9Q9P0T7 183 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 NARFQ9UHQ1 456 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 KLHL21Q9UJP4 597 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 FBXW2Q9UKT8 454 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 CCPG1Q9ULG6 757 aa2.53□□□□□ -2
VPS13C-207ENST00000558919 TNRQ92752 1358 aa2.52□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms