RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 UBTD2Q8WUN7 234 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 TAPBPLQ9BX59 468 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 RBCK1Q9BYM8 510 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 SCN3AQ9NY46 2000 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 NEDD8-MDP1E9PL57 170 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 PPM1DO15297 605 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 REM1O75628 298 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 DHFRP00374 187 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 CXCL3P19876 107 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 GIFP27352 417 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 GABRR2P28476 465 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 IMPA1P29218 277 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 OR10A3P58181 314 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 MLLT11Q13015 90 aaPredicted RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 LASP1Q14847 261 aaKnown RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 NTRK2Q16620 822 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 KLHL22Q53GT1 634 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 C6orf120Q7Z4R8 191 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 DDX53Q86TM3 631 aaKnown RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 BPHLQ86WA6 291 aaPredicted RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 BBS1Q8NFJ9 593 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 OR10H4Q8NGA5 316 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 ZNF582Q96NG8 517 aaPredicted RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 ZCCHC3Q9NUD5 404 aaKnown RBP10.73□□□□□ -0.69
LDLR-208ENST00000558518 ASF1AQ9Y294 204 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 TRAPPC4Q9Y296 219 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 DOCK6Q96HP0 2047 aa10.73□□□□□ -0.69
LDLR-208ENST00000558518 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 PRR23D1E9PI22 279 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 SYN3O14994 580 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 IGHA2P01877 340 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 C1QBP02746 253 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 PRR23D2P0DMB1 279 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 CKBP12277 381 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 OPRD1P41143 372 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 STXBP1P61764 594 aaKnown RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 DSC1Q08554 894 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 ZNF750Q32MQ0 723 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 SPIN4Q56A73 249 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 PGBD2Q6P3X8 592 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 DNAJB7Q7Z6W7 309 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 PLCZ1Q86YW0 608 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 SPRYD4Q8WW59 207 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 POP5Q969H6 163 aaKnown RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 GPA33Q99795 319 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 DHRS9Q9BPW9 319 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 OR2AG1Q9H205 316 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 RC3H2Q9HBD1 1191 aaKnown RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 MAGEB4O15481 346 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 IL1AP01583 271 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 C1SP09871 688 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 FLT3LGP49771 235 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 MVDP53602 400 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 GPR176Q14439 515 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 KANSL1Q7Z3B3 1105 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 LAS2Q8IYD9 372 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 GPR32P1Q8NGA4 272 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 LINC01599Q8WXQ3 324 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.72□□□□□ -0.693e-6■□□□□ 10.6
LDLR-208ENST00000558518 ELAC1Q9H777 363 aaKnown RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 KCNN3Q9UGI6 736 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 SHISA3A0PJX4 238 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 FAM170BA6NMN3 283 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 RNASET2O00584 256 aaKnown RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 GPR37L1O60883 481 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 ADAP00813 363 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 MT-ND4P03905 459 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 CD9P21926 228 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 PAICSP22234 425 aaKnown RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 SPINT3P49223 89 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 ARHGDIBP52566 201 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 AP2S1P53680 142 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 AP1S2P56377 157 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 WDR5P61964 334 aaKnown RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 OC90Q02509 493 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 PRSS45Q7RTY3 260 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 VN1R5Q7Z5H4 357 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 ZER1Q7Z7L7 766 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 ZNF655Q8N720 491 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 ANKK1Q8NFD2 765 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 BCL7CQ8WUZ0 217 aaPredicted RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 ZNF480Q8WV37 535 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 RELTQ969Z4 430 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 AP2M1Q96CW1 435 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 LSM7Q9UK45 103 aaKnown RBP10.72□□□□□ -0.69
LDLR-208ENST00000558518 FBXW2Q9UKT8 454 aa10.72□□□□□ -0.69
LDLR-208ENST00000558518 PRR23AA6NEV1 266 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 SEMA7AO75326 666 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 FURINP09958 794 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 GNSP15586 552 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 PTX3P26022 381 aaPredicted RBP10.71□□□□□ -0.69
LDLR-208ENST00000558518 AGFG1P52594 562 aaKnown RBP10.71□□□□□ -0.69
LDLR-208ENST00000558518 PPP3R1P63098 170 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 MGAT3Q09327 533 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 ADAM15Q13444 863 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 ARSIQ5FYB1 569 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 RAET1GQ6H3X3 334 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 LAMTOR1Q6IAA8 161 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 MZT2AQ6P582 158 aa10.71□□□□□ -0.69
LDLR-208ENST00000558518 ZNF614Q8N883 585 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms