RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-229	ENST00000557348	KRT73	Q86Y46	540 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	CARF	Q8N187	725 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	ADAMTS18	Q8TE60	1221 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	RORB	Q92753	470 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	MAL2	Q969L2	176 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	TRIM63	Q969Q1	353 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	C7orf34	Q96L11	122 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	HOXD1	Q9GZZ0	328 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	DIABLO	Q9NR28	239 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	ENOPH1	Q9UHY7	261 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	EYS	Q5T1H1	3165 aa		11.92	□□□□□ -0.5
SHMT2-229	ENST00000557348	MYO10	Q9HD67	2058 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	PNMA8C	A0A1B0GUJ8	204 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	C19orf67	A6NJJ6	358 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348		A8MVJ9	347 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	STK25	O00506	426 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	EMC8	O43402	210 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	SRPX2	O60687	465 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	CTSV	O60911	334 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ERAL1	O75616	437 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	UPK1B	O75841	260 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	UBXN7	O94888	489 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	C9	P02748	559 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	TRAPPC2	P0DI81	140 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	TRAPPC2B	P0DI82	140 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ITGAM	P11215	1152 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	HOXB3	P14651	431 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	PCMT1	P22061	227 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	CAPZB	P47756	277 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ST13	P50502	369 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	DEFA1	P59665	94 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	DEFA3	P59666	94 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	NDUFA9	Q16795	377 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ZNF542P	Q5EBM4	170 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ADCK1	Q86TW2	530 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	AMER3	Q8N944	861 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	KCT2	Q8NC54	265 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	CHDH	Q8NE62	594 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	LILRB4	Q8NHJ6	448 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	BBS10	Q8TAM1	723 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	SPPL2A	Q8TCT8	520 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	LMX1A	Q8TE12	382 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	IPCEF1	Q8WWN9	437 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	PATE1	Q8WXA2	126 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	DNASE2B	Q8WZ79	361 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	HSPA12B	Q96MM6	686 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	CSF3R	Q99062	836 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	CD180	Q99467	661 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	BTBD2	Q9BX70	525 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	CHRNA10	Q9GZZ6	450 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	RAB33B	Q9H082	229 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	DUSP15	Q9H1R2	295 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	TRIM45	Q9H8W5	580 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ZCCHC3	Q9NUD5	404 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	FAM118A	Q9NWS6	357 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	EPHA6	Q9UF33	1036 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	DAPP1	Q9UN19	280 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	KLHL20	Q9Y2M5	609 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	SIT1	Q9Y3P8	196 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	SAMHD1	Q9Y3Z3	626 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	DUXA	A6NLW8	204 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	C4orf51	C9J302	202 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348		H0YGG7	62 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	DLL1	O00548	723 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	PPM1D	O15297	605 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	FOXD2	O60548	495 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	SOX30	O94993	753 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	WNT1	P04628	370 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	POLR2I	P36954	125 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	AFF3	P51826	1226 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	CRISP3	P54108	245 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	TPD52	P55327	224 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ARF3	P61204	181 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	VLDLR	P98155	873 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	C1orf61	Q13536	156 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	OGFOD3	Q6PK18	319 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	VTCN1	Q7Z7D3	282 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	C17orf82	Q86X59	251 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	OFCC1	Q8IZS5	231 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	LRRC25	Q8N386	305 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ARL14	Q8N4G2	192 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	CSNK1A1L	Q8N752	337 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	HORMAD2	Q8N7B1	307 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	C19orf47	Q8N9M1	422 aa	Known RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	OR4K14	Q8NGD5	310 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	DYNC2LI1	Q8TCX1	351 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	PROX1	Q92786	737 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	TCTN2	Q96GX1	697 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ZNF486	Q96H40	463 aa	Predicted RBP	11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	SLC38A3	Q99624	504 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	MAPKAP1	Q9BPZ7	522 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ERVMER34-1	Q9H9K5	563 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	BCL2L10	Q9HD36	194 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	EXD2	Q9NVH0	621 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	SCN3B	Q9NY72	215 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	ABCG2	Q9UNQ0	655 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	LIPT1	Q9Y234	373 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	CSNK1G3	Q9Y6M4	447 aa		11.91	□□□□□ -0.5
SHMT2-229	ENST00000557348	HEATR5B	Q9P2D3	2071 aa		11.9	□□□□□ -0.5
SHMT2-229	ENST00000557348	PLXND1	Q9Y4D7	1925 aa		11.9	□□□□□ -0.5

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