RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ABCD3	P28288	659 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	RPS13	P62277	151 aa	Known RBP	11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	FUT7	Q11130	342 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	PDIA2	Q13087	525 aa	Known RBP	11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	ACKR1	Q16570	336 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	GRHL2	Q6ISB3	625 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	SCIMP	Q6UWF3	145 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	ANGPTL8	Q6UXH0	198 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	ADGRE4P	Q86SQ3	457 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	TRIM42	Q8IWZ5	723 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	PRR22	Q8IZ63	422 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	ZNF615	Q8N8J6	731 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	STAG3L4	Q8TBR4	150 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	EXT2	Q93063	718 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	UCN3	Q969E3	161 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	MTERF1	Q99551	399 aa	Known RBP	11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	DDX31	Q9H8H2	851 aa	Known RBP	11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	TXNDC16	Q9P2K2	825 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	OPTC	Q9UBM4	332 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	TESMIN	Q9Y4I5	508 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	PCDHGA11	Q9Y5H2	935 aa		11.52	□□□□□ -0.57
SHMT2-223	ENST00000556689	KIAA1549	Q9HCM3	1950 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689		A0A0A6YYD5	115 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	INAFM1	C9JVW0	142 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	PGRMC2	O15173	223 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	CTIF	O43310	598 aa	Known RBP	11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	TMPRSS11D	O60235	418 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	ICOSLG	O75144	302 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	EED	O75530	441 aa	Known RBP	11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	CBR3	O75828	277 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	EPB42	P16452	691 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	NAGA	P17050	411 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	CHM	P24386	653 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	PIK3R1	P27986	724 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	MC3R	P41968	323 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	PHEX	P78562	749 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	FAM27E3	Q08E93	113 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	FASTKD3	Q14CZ7	662 aa	Known RBP	11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	SLC30A6	Q6NXT4	461 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	C8orf74	Q6P047	294 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	NUP54	Q7Z3B4	507 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	ISCA2	Q86U28	154 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	MYLK4	Q86YV6	388 aa	Predicted RBP	11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	CREG2	Q8IUH2	290 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	GALNT12	Q8IXK2	581 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	GCNT2	Q8N0V5	402 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	C17orf47	Q8NEP4	570 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	OR7G1	Q8NGA0	311 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	OR14L1P	Q8NHC6	308 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	PERP	Q96FX8	193 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	UBXN10	Q96LJ8	280 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	WFIKKN1	Q96NZ8	548 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	CCL19	Q99731	98 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	ALG9	Q9H6U8	611 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	SMYD2	Q9NRG4	433 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	ZNF226	Q9NYT6	803 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	PACSIN3	Q9UKS6	424 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	EXO1	Q9UQ84	846 aa	Known RBP	11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	TSC22D4	Q9Y3Q8	395 aa		11.51	□□□□□ -0.57
SHMT2-223	ENST00000556689	FREM3	P0C091	2139 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	NSD1	Q96L73	2696 aa	Predicted RBP	11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	C2orf72	A6NCS6	295 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	TRIM64	A6NGJ6	449 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	TRIM64B	A6NI03	449 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	CXorf49	A8MYA2	514 aa	Predicted RBP	11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	SUPT3H	B4E1H0	165 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	MSTN	O14793	375 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	SNPH	O15079	494 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	SUPT3H	O75486	399 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	PPM1B	O75688	479 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	SLU7	O95391	586 aa	Known RBP	11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	AIFM1	O95831	613 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	CT62	P0C5K7	136 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	RHOXF2B	P0C7M4	288 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	NT5E	P21589	574 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	BSG	P35613	385 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	CPOX	P36551	454 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	PCYT1A	P49585	367 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	RAB10	P61026	200 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	SNTA1	Q13424	505 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	CUL3	Q13618	768 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	KBTBD12	Q3ZCT8	623 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	C6orf163	Q5TEZ5	329 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	LIPJ	Q5W064	366 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	OR52E8	Q6IFG1	317 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	TMEM81	Q6P7N7	255 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	AAGAB	Q6PD74	315 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	PLXDC2	Q6UX71	529 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	TEX9	Q8N6V9	391 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	OR4K14	Q8NGD5	310 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	CDKL2	Q92772	493 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	REPS1	Q96D71	796 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	PIK3IP1	Q96FE7	263 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	GPR22	Q99680	433 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	CPNE1	Q99829	537 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	ZNF717	Q9BY31	904 aa	Predicted RBP	11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	ACTR8	Q9H981	624 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	UBTD1	Q9HAC8	227 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	NMRAL1	Q9HBL8	299 aa		11.5	□□□□□ -0.57
SHMT2-223	ENST00000556689	SERHL	Q9NQF3	203 aa		11.5	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms