RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 SLITRK5O94991 958 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 SOX30O94993 753 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 ITGAMP11215 1152 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 RHCEP18577 417 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 PPP2R2DQ66LE6 453 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 C18orf63Q68DL7 685 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 ARL9Q6T311 187 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 MCHR1Q99705 422 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 TREX2Q9BQ50 279 aaPredicted RBP14.07□□□□□ -0.16
CUX1-215ENST00000556210 RACGAP1Q9H0H5 632 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 SLC35C2Q9NQQ7 365 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 SNX7Q9UNH6 387 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 SLC5A10A0PJK1 596 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 CXCL10P02778 98 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 TGM1P22735 817 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 GGT2P36268 569 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 TGM4P49221 684 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 IFITM3Q01628 133 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 ZNF155Q12901 538 aaPredicted RBP14.07□□□□□ -0.16
CUX1-215ENST00000556210 ZNF791Q3KP31 576 aaPredicted RBP14.07□□□□□ -0.16
CUX1-215ENST00000556210 MINDY4Q4G0A6 757 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 KDM4DQ6B0I6 523 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 ZNF433Q8N7K0 673 aaPredicted RBP14.07□□□□□ -0.16
CUX1-215ENST00000556210 GATSQ8NAP1 163 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 ZNF671Q8TAW3 534 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 PIGXQ8TBF5 258 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 RIPOR3Q96MK2 946 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 INSM2Q96T92 566 aaPredicted RBP14.07□□□□□ -0.16
CUX1-215ENST00000556210 OR2B2Q9GZK3 357 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 WDR45Q9Y484 360 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 PCDHGA6Q9Y5G7 932 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 COLEC10Q9Y6Z7 277 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 CCDC88CQ9P219 2028 aa14.07□□□□□ -0.16
CUX1-215ENST00000556210 EIF3FO00303 357 aaPredicted RBP14.06□□□□□ -0.16
CUX1-215ENST00000556210 CDH11P55287 796 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 STX4Q12846 297 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 CCDC157Q569K6 752 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 OR4C11Q6IEV9 310 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 PAQR6Q6TCH4 344 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 FAM98AQ8NCA5 519 aaKnown RBP14.06□□□□□ -0.16
CUX1-215ENST00000556210 NUP43Q8NFH3 380 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 CHTF18Q8WVB6 975 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 OTUB2Q96DC9 234 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 LRIG1Q96JA1 1093 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 TOX2Q96NM4 488 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 CTRCQ99895 268 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 BRF2Q9HAW0 419 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 STMN3Q9NZ72 180 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 CSNK1G3Q9Y6M4 447 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 SLC30A4O14863 429 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 PGRMC2O15173 223 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 GKN3PP0CG01 181 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 KHKP50053 298 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 CXCR4P61073 352 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 LTB4RQ15722 352 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 BCL7AQ4VC05 210 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 WDR20Q8TBZ3 569 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 SPACA7Q96KW9 195 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 ZFP3Q96NJ6 502 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 MAPKAP1Q9BPZ7 522 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 CLDND1Q9NY35 253 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 ZNF639Q9UID6 485 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 SLC6A14Q9UN76 642 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 PCDHGA3Q9Y5H0 932 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 TRPM6Q9BX84 2022 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 H0Y8X5 98 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 HAT1O14929 419 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 HYAL3O43820 417 aaPredicted RBP14.06□□□□□ -0.16
CUX1-215ENST00000556210 RORCP51449 518 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 WNT3P56703 355 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 KCNJ10P78508 379 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 SLC3A1Q07837 685 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 LARS2Q15031 903 aaKnown RBP14.06□□□□□ -0.16
CUX1-215ENST00000556210 PRRT3Q5FWE3 981 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 PRSS36Q5K4E3 855 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 IDNKQ5T6J7 187 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 ANKRD33Q7Z3H0 272 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 FKBP10Q96AY3 582 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 CAMK1GQ96NX5 476 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 LYSMD1Q96S90 227 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 EGLN3Q9H6Z9 239 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 FBXO8Q9NRD0 319 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 FAM172BPA6NC97 362 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 LDB3O75112 727 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 ITGB7P26010 798 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 RBBP4Q09028 425 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 ILF3Q12906 894 aaKnown RBP eCLIP14.06□□□□□ -0.164e-7■■■■□ 21.7
CUX1-215ENST00000556210 GGTA1PQ4G0N0 100 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 AGAP6Q5VW22 663 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 PEX5LQ8IYB4 626 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 AMER3Q8N944 861 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 OR56A3Q8NH54 315 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 AGAP4Q96P64 663 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 TM9SF2Q99805 663 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 TRIOBPQ9H2D6 2365 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 SERHL2Q9H4I8 314 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 KLHL31Q9H511 634 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 MAN2B2Q9Y2E5 1009 aa14.06□□□□□ -0.16
CUX1-215ENST00000556210 B4DGG1 531 aa14.05□□□□□ -0.16
CUX1-215ENST00000556210 LCMT2O60294 686 aaKnown RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms