RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 IKBIPQ70UQ0 350 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 TRILQ7L0X0 811 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 C4orf33Q8N1A6 199 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 OR10G3Q8NGC4 313 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 C16orf78Q8WTQ4 265 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 HSPBAP1Q96EW2 488 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 ZNF764Q96H86 408 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 TP63Q9H3D4 680 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 ZFP64Q9NPA5 681 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 MYNNQ9NPC7 610 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 TUBA8Q9NY65 449 aaPredicted RBP14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 PRODH2Q9UF12 536 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 SH3BGRL2Q9UJC5 107 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 PCDHGB3Q9Y5G1 929 aa14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.76□□□□□ -0.05
CCDC88C-209ENST00000554872 ADGRG4Q8IZF6 3080 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 LRRC3CA6NJW4 275 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 AQP7O14520 342 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 BCKDKO14874 412 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 TO15178 435 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 HCN1O60741 890 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 TRIM13O60858 407 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 TRIM3O75382 744 aaPredicted RBP14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 ERAL1O75616 437 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 SNX4O95219 450 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 DDCP20711 480 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 ABCD3P28288 659 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 PIGAP37287 484 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 FEN1P39748 380 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 DNASE1L1P49184 302 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 ALDH9A1P49189 494 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 RPP38P78345 283 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 DUSP8Q13202 625 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 ZNF628Q5EBL2 1059 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 CD163Q86VB7 1156 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 FAM13CQ8NE31 585 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 SPPL2AQ8TCT8 520 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 DOK4Q8TEW6 326 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 SREK1Q8WXA9 508 aaKnown RBP14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 FCRL1Q96LA6 429 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 STMN4Q9H169 189 aaPredicted RBP14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 TNFRSF12AQ9NP84 129 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 ACKR4Q9NPB9 350 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 CHST11Q9NPF2 352 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 RRAGDQ9NQL2 400 aaPredicted RBP14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 SLC35C2Q9NQQ7 365 aa14.75□□□□□ -0.05
CCDC88C-209ENST00000554872 EXPH5Q8NEV8 1989 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 FAM166BA8MTA8 275 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 G3V3Y1 287 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 CDC40O60508 579 aaKnown RBP eCLIP14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 PLOD3O60568 738 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 ANXA4P09525 319 aaPredicted RBP14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 NEFHP12036 1026 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 DRD5P21918 477 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 COL8A1P27658 744 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 MAGEA5P43359 124 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 PPICP45877 212 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 EMDP50402 254 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 KCNJ2P63252 427 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 SLC10A1Q14973 349 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 KIAA0040Q15053 153 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 IMPG1Q17R60 797 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 EMC4Q5J8M3 183 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 ZNF787Q6DD87 383 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 FAM71E1Q6IPT2 247 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 FAM111BQ6SJ93 734 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 TICAM1Q8IUC6 712 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 C10orf107Q8IVU9 208 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 CCDC63Q8NA47 563 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 OR2W6PQ8NHA6 318 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 LCORQ96JN0 433 aaPredicted RBP14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 ZNF597Q96LX8 424 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 BTBD9Q96Q07 612 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 GATA5Q9BWX5 397 aaPredicted RBP14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 ANGPTL4Q9BY76 406 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 BRINP2Q9C0B6 783 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 IQCGQ9H095 443 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 NXF5Q9H1B4 397 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 C12orf65Q9H3J6 166 aaKnown RBP14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 GIMAP4Q9NUV9 329 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 SENP1Q9P0U3 644 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 DTX4Q9Y2E6 619 aa14.74□□□□□ -0.05
CCDC88C-209ENST00000554872 ZNF407Q9C0G0 2248 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 A0A087WV62 115 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 FRG2CA6NGY1 282 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 MYO1GB0I1T2 1018 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 PRSS44E7EML9 344 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 SLC28A1O00337 649 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 HNRNPRO43390 633 aaKnown RBP14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 NPHS1O60500 1241 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 CRCPO75575 148 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 PPM1BO75688 479 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 TPOP07202 933 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 FGF4P08620 206 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 MPIP34949 423 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 SERPINB5P36952 375 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 IFFO1Q0D2I5 559 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 SNTA1Q13424 505 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 SPDYAQ5MJ70 313 aa14.73□□□□□ -0.05
CCDC88C-209ENST00000554872 TMEM211Q6ICI0 200 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms