RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 SLC12A9Q9BXP2 914 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 RNF208Q9H0X6 261 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 OR51B5Q9H339 312 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 EGLN3Q9H6Z9 239 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 RC3H2Q9HBD1 1191 aaKnown RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SGK2Q9HBY8 427 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 PAK6Q9NQU5 681 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 MRPL17Q9NRX2 175 aaKnown RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 NUDT15Q9NV35 164 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 DNAJC11Q9NVH1 559 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 IL20RAQ9UHF4 553 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF222Q9UK12 451 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 HCN2Q9UL51 889 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 MAPRE3Q9UPY8 281 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SNTNA6NMZ2 147 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 HOXA2O43364 376 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SLC43A1O75387 559 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 RGS11O94810 467 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 ARHGEF15O94989 841 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SOD1P00441 154 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 TGFB1P01137 390 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 RAF1P04049 648 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 LIMS3P0CW19 117 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 LIMS4P0CW20 117 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 POU3F2P20265 443 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 TBXA2RP21731 343 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SLC6A1P30531 599 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 CHI3L1P36222 383 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 PREPP48147 710 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 ALDH9A1P49189 494 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 VSX2P58304 361 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 HEPACAMQ14CZ8 416 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 PLA1AQ53H76 456 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM201Q5SNT2 666 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 RAET1GQ6H3X3 334 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 WASH2PQ6VEQ5 465 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 HSDL2Q6YN16 418 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 GDPGP1Q6ZNW5 385 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 QSOX2Q6ZRP7 698 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 PLEKHM3Q6ZWE6 761 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 LRRC70Q7Z2Q7 622 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 TRMT11Q7Z4G4 463 aaKnown RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 LAPTM4BQ86VI4 370 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 TRAPPC5Q8IUR0 188 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 ARIH2OSQ8N7S6 290 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF740Q8NDX6 193 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 OR7G3Q8NG95 312 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SLC38A5Q8WUX1 472 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 POF1BQ8WVV4 589 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 DNAJA4Q8WW22 397 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 GEMIN6Q8WXD5 167 aaKnown RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SORCS1Q8WY21 1168 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SLC9A6Q92581 669 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 HYLS1Q96M11 299 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SLC7A5P2Q9GIP4 190 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 POLR2J3Q9H1A7 115 aaKnown RBP4.59□□□□□ -1.67
LIMA1-214ENST00000552783 TMEM245Q9H330 911 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 MTG2Q9H4K7 406 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 BRD9Q9H8M2 597 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 SLAMF7Q9NQ25 335 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 NLGN3Q9NZ94 848 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 BTNL2Q9UIR0 455 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 KCND3Q9UK17 655 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 NUP50Q9UKX7 468 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 TET1Q8NFU7 2136 aa4.59□□□□□ -1.67
LIMA1-214ENST00000552783 PRAMEF27A3QJZ7 478 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ARHGEF33A8MVX0 844 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 M0R3H8 397 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF197O14709 1029 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 INPPL1O15357 1258 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 PDPK1O15530 556 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 PROM1O43490 865 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 NME6O75414 186 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF821O75541 412 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 TSPAN9O75954 239 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 SLC16A8O95907 504 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 CH25HO95992 272 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 BCHEP06276 602 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ZDHHC11BP0C7U3 371 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 PRKAR1AP10644 381 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 RHCEP18577 417 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 CELP19835 753 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 MMP11P24347 488 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF81P51508 661 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 CCR6P51684 374 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 OR10A3P58181 314 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 SNRPD1P62314 119 aaKnown RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 SIM1P81133 766 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 RPL6Q02878 288 aaKnown RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 MLLT1Q03111 559 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 PTSQ03393 145 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ILKQ13418 452 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF791Q3KP31 576 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 TMEM81Q6P7N7 255 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 CRTC1Q6UUV9 634 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 TMEM107Q6UX40 140 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 KANSL1Q7Z3B3 1105 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 C16orf62Q7Z3J2 963 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ZER1Q7Z7L7 766 aa4.59□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms