RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PKMYT1Q99640 499 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 C17orf62Q9BQA9 187 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 TRAF4Q9BUZ4 470 aaPredicted RBP3.48□□□□□ -1.85
LIMA1-208ENST00000551691 C1QTNF7Q9BXJ2 289 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 RBM38Q9H0Z9 239 aaKnown RBP3.48□□□□□ -1.85
LIMA1-208ENST00000551691 GLT8D2Q9H1C3 349 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 SLA2Q9H6Q3 261 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 RNF121Q9H920 327 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 SGK2Q9HBY8 427 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 GPN1Q9HCN4 374 aaPredicted RBP3.48□□□□□ -1.85
LIMA1-208ENST00000551691 RAB9BQ9NP90 201 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 KCNMB3Q9NPA1 279 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 PRSS16Q9NQE7 514 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 TMEM30AQ9NV96 361 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 DNAJC11Q9NVH1 559 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 HIF1ANQ9NWT6 349 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 ELOVL2Q9NXB9 296 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 FBXL12Q9NXK8 326 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 TAS2R3Q9NYW6 316 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 GPR132Q9UNW8 380 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 TMED3Q9Y3Q3 217 aa3.48□□□□□ -1.85
LIMA1-208ENST00000551691 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.48□□□□□ -1.85
LIMA1-208ENST00000551691 PKDREJQ9NTG1 2253 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TGP01266 2768 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 IGLV5-39A0A0G2JS06 123 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TTC26A0AVF1 554 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 ILVBLA1L0T0 632 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CCDC169A6NNP5 214 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 ZNF814B7Z6K7 855 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 I6L893 689 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 DVL1O14640 695 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 MID1O15344 667 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 YKT6O15498 198 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 ZG16O60844 167 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GAGE7O76087 117 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 IFNB1P01574 187 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GP1BAP07359 652 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CSN3P07498 182 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GAGE12FP0CL80 117 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GAGE12GP0CL81 117 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GAGE12IP0CL82 117 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 SMIM18P0DKX4 95 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 MCF2P10911 925 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CCL4P13236 92 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 ETS1P14921 441 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CCNA2P20248 432 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CBLP22681 906 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 JAK1P23458 1154 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 LMO2P25791 158 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GNA11P29992 359 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CORO1AP31146 461 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TIA1P31483 386 aaKnown RBP eCLIP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 HNRNPH3P31942 346 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 METAP1P53582 386 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 UCP2P55851 309 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 PEX3P56589 373 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GSDMDP57764 484 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CX3CL1P78423 397 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CCL7P80098 99 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 SLC34A1Q06495 639 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 LTBQ06643 244 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CRYZQ08257 329 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GAGE1Q13065 139 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GAGE4Q13068 117 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TSTA3Q13630 321 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 NPTX1Q15818 432 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CARTPTQ16568 116 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 PHKG1Q16816 387 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 DEFB133Q30KQ1 61 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 SYT14P1Q58G82 188 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 PAPPA-AS1Q5QFB9 102 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 LCE1AQ5T7P2 110 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 IRAK1BP1Q5VVH5 260 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 ISLR2Q6UXK2 745 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 ZNF517Q6ZMY9 492 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 PRSS42Q7Z5A4 293 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TMPRSS11BQ86T26 416 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TMEM135Q86UB9 458 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 MEX3DQ86XN8 651 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TMEM126BQ8IUX1 230 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 FOXRED2Q8IWF2 684 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 ZC3H3Q8IXZ2 948 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 KLHDC8AQ8IYD2 350 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 C1orf87Q8N0U7 546 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 NAGSQ8N159 534 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 NANOGP1Q8N7R0 232 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 RASGEF1AQ8N9B8 481 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 THAP8Q8NA92 274 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 OR4K1Q8NGD4 311 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 APOBEC4Q8WW27 367 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 INPP5DQ92835 1189 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TSACCQ96A04 125 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 SNRNP40Q96DI7 357 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 NSL1Q96IY1 281 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 PIWIL1Q96J94 861 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CCDC3Q9BQI4 270 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 URM1Q9BTM9 101 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 ANP32EQ9BTT0 268 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 SF3B5Q9BWJ5 86 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 QTRT1Q9BXR0 403 aaKnown RBP3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms