RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 PLA2G15Q8NCC3 412 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 RPLP0P6Q8NHW5 317 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 NKD1Q969G9 470 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 MCCC1Q96RQ3 725 aaPredicted RBP15.44■□□□□ 0.06
CUX1-213ENST00000549414 ABCD2Q9UBJ2 740 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 COL11A1P12107 1806 aaPredicted RBP15.44■□□□□ 0.06
CUX1-213ENST00000549414 FOCADQ5VW36 1801 aa15.44■□□□□ 0.06
CUX1-213ENST00000549414 H3BNC9 293 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 PROM1O43490 865 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 ZNF888P0CJ79 500 aaPredicted RBP15.43■□□□□ 0.06
CUX1-213ENST00000549414 CRHBPP24387 322 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 GBX2P52951 348 aaPredicted RBP15.43■□□□□ 0.06
CUX1-213ENST00000549414 DECR1Q16698 335 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 WDR45BQ5MNZ6 344 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 CCSAPQ6IQ19 270 aaPredicted RBP15.43■□□□□ 0.06
CUX1-213ENST00000549414 RPTNQ6XPR3 784 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 THAP3Q8WTV1 239 aaPredicted RBP15.43■□□□□ 0.06
CUX1-213ENST00000549414 SP140LQ9H930 580 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 PELI2Q9HAT8 420 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 MYNNQ9NPC7 610 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 DKK3Q9UBP4 350 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 PRRT4C9JH25 899 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 H0YIV9 168 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 PRKRAO75569 313 aaKnown RBP15.43■□□□□ 0.06
CUX1-213ENST00000549414 SOX30O94993 753 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 TSPAN12O95859 305 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 GNALP38405 381 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 NAA10P41227 235 aaPredicted RBP15.43■□□□□ 0.06
CUX1-213ENST00000549414 HHEXQ03014 270 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 MAD2L1BPQ15013 274 aaPredicted RBP15.43■□□□□ 0.06
CUX1-213ENST00000549414 ZNF852Q6ZMS4 543 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 HDDC2Q7Z4H3 204 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 NDNFQ8TB73 568 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 TRIM43Q96BQ3 446 aaPredicted RBP15.43■□□□□ 0.06
CUX1-213ENST00000549414 TAPBPLQ9BX59 468 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 TCF7L1Q9HCS4 588 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 MARK1Q9P0L2 795 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 CLCA1A8K7I4 914 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 NOS1APO75052 506 aaPredicted RBP15.43■□□□□ 0.06
CUX1-213ENST00000549414 CSTAP01040 98 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 EDNRAP25101 427 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 GABARAPL2P60520 117 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 CTBSQ01459 385 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 PROX2Q3B8N5 592 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 COX20Q5RI15 118 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 TMEFF1Q8IYR6 380 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 HORMAD2Q8N7B1 307 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 LMAN1LQ9HAT1 526 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 SEC14L4Q9UDX3 406 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 BOLA2-SMG1P6H3BVE0 249 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 LDB3O75112 727 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 ATP6V1G1O75348 118 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 HOXC8P31273 242 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 OR12D2P58182 307 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 PRSS48Q7RTY5 328 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 OR2T33Q8NG76 320 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 TRIM2Q9C040 744 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 IKZF5Q9H5V7 419 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 TRIM36Q9NQ86 728 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 PPT2Q9UMR5 302 aa15.43■□□□□ 0.06
CUX1-213ENST00000549414 WBP4O75554 376 aaKnown RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 ADAP00813 363 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 HNRNPA2B1P22626 353 aaKnown RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 OPRL1P41146 370 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 BNC1Q01954 994 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 EMX1Q04741 257 aaPredicted RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 PTGES3Q15185 160 aaKnown RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 ANKRD34AQ69YU3 496 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 MOAP1Q96BY2 351 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 ERMAPQ96PL5 475 aaPredicted RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 HDHD5Q9BXW7 423 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 GNG8Q9UK08 70 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 UBE2QL1A1L167 161 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 ANXA2P2A6NMY6 339 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 PSMD9O00233 223 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 ANXA2P07355 339 aaKnown RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 C4BPBP20851 252 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 ZNF791Q3KP31 576 aaPredicted RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 LINGO2Q7L985 606 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 OR51L1Q8NGJ5 315 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 UBTD2Q8WUN7 234 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 QRSL1Q9H0R6 528 aaKnown RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 MMP27Q9H306 513 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 LTB4R2Q9NPC1 389 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 CENPMQ9NSP4 180 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 TEX10Q9NXF1 929 aaPredicted RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 NCDNQ9UBB6 729 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 IFT52Q9Y366 437 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 A8MV72 311 aaPredicted RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 KCNK5O95279 499 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 MAOBP27338 520 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 CCKBRP32239 447 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 DSG2Q14126 1118 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 GGTA1PQ4G0N0 100 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 CCNJQ5T5M9 372 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 Q6ZSR6 202 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 NANOGNBQ7Z5D8 188 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 MEIOBQ8N635 442 aa15.42■□□□□ 0.06
CUX1-213ENST00000549414 UHRF1Q96T88 793 aaPredicted RBP15.42■□□□□ 0.06
CUX1-213ENST00000549414 TM9SF2Q99805 663 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms