RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 H3BN98 237 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 ZW10O43264 779 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 FHP07954 510 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 OCM2P0CE71 109 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 OCMP0CE72 109 aaPredicted RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 CSNK2A2P19784 350 aaPredicted RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 CTHP32929 405 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 MAGEA10P43363 369 aaPredicted RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 XKP51811 444 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 SMIM11AP58511 58 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 BTN3A2P78410 334 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 LSM11P83369 360 aaKnown RBP eCLIP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 DOC2BQ14184 412 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 RGS21Q2M5E4 152 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 FBXO43Q4G163 708 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 BHLHB9Q6PI77 547 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 FAM92BQ6ZTR7 304 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 OR9A2Q8NGT5 310 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 CRELD1Q96HD1 420 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 ZNF681Q96N22 645 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 OR5M11Q96RB7 305 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 KDM1AO60341 852 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 NME6O75414 186 aaPredicted RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 HOXC4P09017 264 aaPredicted RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 UGT2B10P36537 528 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 MC3RP41968 323 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 TSFMP43897 325 aaKnown RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 MAN2A2P49641 1150 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 RAB15P59190 212 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 STXBP1P61764 594 aaKnown RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 SNRPGP62308 76 aaKnown RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 COL9A2Q14055 689 aaPredicted RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 INAQ16352 499 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 GPAT3Q53EU6 434 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 SOWAHCQ53LP3 525 aaPredicted RBP17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 C12orf73Q69YU5 71 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 SNX29P2Q8IUI4 249 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 OR56A1Q8NGH5 318 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 BMFQ96LC9 184 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 OR51E2Q9H255 320 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 RNF167Q9H6Y7 350 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 FBRSQ9HAH7 460 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 SLC9A8Q9Y2E8 581 aa17.44■□□□□ 0.38
PRPF40B-208ENST00000548436 SLITRK5O94991 958 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 HSMCR30P0CW71 290 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 MPIP34949 423 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 BUD31P41223 144 aaPredicted RBP17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 MAGEA8P43361 318 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 RGS6P49758 472 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 LIMK1P53667 647 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 NFATC4Q14934 902 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 CEBPEQ15744 281 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 PLAG1Q6DJT9 500 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 ASB12Q8WXK4 309 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 ELP4Q96EB1 424 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 OR7D2Q96RA2 312 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 SPATA5L1Q9BVQ7 753 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 FNDC11Q9BVV2 318 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 ROGDIQ9GZN7 287 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 TMEM168Q9H0V1 697 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 SLC28A3Q9HAS3 691 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 EQTNQ9NQ60 294 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 CTPS2Q9NRF8 586 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 DNAJC27Q9NZQ0 273 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 IFT52Q9Y366 437 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 A0A0G2JPF8 293 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 HNRNPCL2B2RXH8 293 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 HNRNPCL3B7ZW38 293 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 EMC8O43402 210 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 CBFA2T3O75081 653 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 CNOT3O75175 753 aaKnown RBP17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 RPLP0P05388 317 aaKnown RBP17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 ZNF888P0CJ79 500 aaPredicted RBP17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 HNRNPCL4P0DMR1 293 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 MMP11P24347 488 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 ACSL1P33121 698 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 ANXA11P50995 505 aaKnown RBP17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 PRR5P85299 388 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 IFITM3Q01628 133 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 LTB4RQ15722 352 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 TMEM31Q5JXX7 168 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 ZER1Q7Z7L7 766 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 TRIM73Q86UV7 250 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 NUP43Q8NFH3 380 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 FLVCR1-AS1Q8TAF5 88 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 C9orf43Q8TAL5 461 aaPredicted RBP17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 KAT2AQ92830 837 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 MOAP1Q96BY2 351 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 ZG16BQ96DA0 208 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 C6orf106Q9H6K1 298 aaPredicted RBP17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 SCML1Q9UN30 329 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 PCDHGA3Q9Y5H0 932 aa17.43■□□□□ 0.38
PRPF40B-208ENST00000548436 LOC100506127A0A0U1RQW1 187 aa17.42■□□□□ 0.38
PRPF40B-208ENST00000548436 TNNI3P19429 210 aa17.42■□□□□ 0.38
PRPF40B-208ENST00000548436 TUBA1BP68363 451 aa17.42■□□□□ 0.38
PRPF40B-208ENST00000548436 ADAM15Q13444 863 aa17.42■□□□□ 0.38
PRPF40B-208ENST00000548436 FBXO42Q6P3S6 717 aa17.42■□□□□ 0.38
PRPF40B-208ENST00000548436 TUBA1AQ71U36 451 aa17.42■□□□□ 0.38
PRPF40B-208ENST00000548436 ZNF367Q7RTV3 350 aa17.42■□□□□ 0.38
PRPF40B-208ENST00000548436 MORN4Q8NDC4 146 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms