RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZDHHC18Q9NUE0 388 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 TEX10Q9NXF1 929 aaPredicted RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 QPCTLQ9NXS2 382 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 PCDHGB3Q9Y5G1 929 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 TNPO3Q9Y5L0 923 aaKnown RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 NPFFR2Q9Y5X5 522 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 HIVEP1P15822 2718 aa7.76□□□□□ -1.17
USP28-215ENST00000545608 PHF3Q92576 2039 aaKnown RBP7.76□□□□□ -1.17
USP28-215ENST00000545608 MED13LQ71F56 2210 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 ANKRD17O75179 2603 aaKnown RBP7.75□□□□□ -1.17
USP28-215ENST00000545608 C15orf38-AP3S2A0A0A6YYH1 394 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 CCDC189A1A4V9 331 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 AHRRA9YTQ3 701 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 CTAG2O75638 210 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 TRAPPC6AO75865 159 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 ZWINTO95229 277 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 CLDN9O95484 217 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 EPPINO95925 133 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 KLK1P06870 262 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 CD1EP15812 388 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 S1PR1P21453 382 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 GDF1P27539 372 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 PIK3R1P27986 724 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 SOX18P35713 384 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 XKP51811 444 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 CBX1P83916 185 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 PLAURQ03405 335 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 CRYZQ08257 329 aaKnown RBP7.75□□□□□ -1.17
USP28-215ENST00000545608 FUT7Q11130 342 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 FNDC7Q5VTL7 733 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 FAM219BQ5XKK7 198 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 HLA-DQA1Q5Y7H0 255 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 TMEM198Q66K66 360 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 OR52E8Q6IFG1 317 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 KLC3Q6P597 504 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 SYT10Q6XYQ8 523 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 PRR22Q8IZ63 422 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 LIX1Q8N485 282 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 RELL2Q8NC24 303 aaPredicted RBP7.75□□□□□ -1.17
USP28-215ENST00000545608 TNIP2Q8NFZ5 429 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 ATP6V1E2Q96A05 226 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 NTNG2Q96CW9 530 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 PHF21BQ96EK2 531 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 ZNF597Q96LX8 424 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 NSUN5Q96P11 429 aaKnown RBP7.75□□□□□ -1.17
USP28-215ENST00000545608 GNRHR2Q96P88 292 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 SERPINI1Q99574 410 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 TIMP4Q99727 224 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 LRRC1Q9BTT6 524 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 NTMT1Q9BV86 223 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 ANGPTL4Q9BY76 406 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 OR10A5Q9H207 317 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 LIME1Q9H400 295 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 ZBTB26Q9HCK0 441 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 DNAJB12Q9NXW2 375 aaKnown RBP7.75□□□□□ -1.17
USP28-215ENST00000545608 NINJ2Q9NZG7 142 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 SLC6A5Q9Y345 797 aa7.75□□□□□ -1.17
USP28-215ENST00000545608 A0A1B0GTL3 188 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 FAM221AA4D161 298 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 HSPB2A8KAH6 182 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 CAPN14A8MX76 684 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 FAM47E-STBD1D6RA91 191 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 SYT5O00445 386 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 PPP6CO00743 305 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 TP53I11O14683 189 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 SEMA3DO95025 777 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 SNX4O95219 450 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 HPNP05981 417 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 CPMP14384 443 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 NT5EP21589 574 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 UQCRC1P31930 480 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 CEACAM8P31997 349 aaPredicted RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 ARL1P40616 181 aaPredicted RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 CASP3P42574 277 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 KIR2DL3P43628 341 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 SERPINB8P50452 374 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 CDK9P50750 372 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 CCNG1P51959 295 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 ETF1P62495 437 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 MGAT2Q10469 447 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 TRAF3Q13114 568 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 LAPTM4AQ15012 233 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 RPS6KA2Q15349 733 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 HSPB2Q16082 182 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 ACSF3Q4G176 576 aaPredicted RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 EIPR1Q53HC9 387 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 SGO1Q5FBB7 561 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 FRG2Q64ET8 278 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 VASNQ6EMK4 673 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 METTL2BQ6P1Q9 378 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 POMZP3Q6PJE2 187 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 FAM111BQ6SJ93 734 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 RPS27LQ71UM5 84 aaKnown RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 ZNF572Q7Z3I7 529 aaPredicted RBP7.74□□□□□ -1.17
USP28-215ENST00000545608 MMP21Q8N119 569 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 METTL4Q8N3J2 472 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 SIMC1Q8NDZ2 872 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 OR4K14Q8NGD5 310 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 RILPQ96NA2 401 aa7.74□□□□□ -1.17
USP28-215ENST00000545608 FRG2BQ96QU4 278 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms