RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 TREX2Q9BQ50 279 aaPredicted RBP12.97□□□□□ -0.33
VPS33A-208ENST00000543633 RSPO3Q9BXY4 272 aaPredicted RBP12.97□□□□□ -0.33
VPS33A-208ENST00000543633 SPHK2Q9NRA0 654 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 RBFOX1Q9NWB1 397 aaKnown RBP12.97□□□□□ -0.33
VPS33A-208ENST00000543633 MARK1Q9P0L2 795 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 ADAM30Q9UKF2 790 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 FBXW2Q9UKT8 454 aa12.97□□□□□ -0.33
VPS33A-208ENST00000543633 A0A0B4J293 547 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 KDM4EB2RXH2 506 aaPredicted RBP12.96□□□□□ -0.33
VPS33A-208ENST00000543633 FGF19O95750 216 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 PRKCAP17252 672 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 KIR2DL3P43628 341 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 DGKEP52429 567 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 RPS26P62854 115 aaKnown RBP12.96□□□□□ -0.33
VPS33A-208ENST00000543633 REEP5Q00765 189 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 GPR19Q15760 415 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 TRIQKQ629K1 86 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 CNKSR3Q6P9H4 555 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 PRICKLE2Q7Z3G6 844 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 ZER1Q7Z7L7 766 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 C17orf64Q86WR6 236 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 NUDT13Q86X67 352 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 DCUN1D3Q8IWE4 304 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 ZNF740Q8NDX6 193 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 SFXN5Q8TD22 340 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 AUTS2Q8WXX7 1259 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 TTC9Q92623 222 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 TRIM43Q96BQ3 446 aaPredicted RBP12.96□□□□□ -0.33
VPS33A-208ENST00000543633 RNF31Q96EP0 1072 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 CAMK1GQ96NX5 476 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 ARHGAP9Q9BRR9 750 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 TTYH2Q9BSA4 534 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 ZDHHC5Q9C0B5 715 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 PCBD2Q9H0N5 130 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 PPP1R3EQ9H7J1 279 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 RANGRFQ9HD47 186 aaPredicted RBP12.96□□□□□ -0.33
VPS33A-208ENST00000543633 MAN2C1Q9NTJ4 1040 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 NUFIP1Q9UHK0 495 aaKnown RBP12.96□□□□□ -0.33
VPS33A-208ENST00000543633 POLHQ9Y253 713 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 LRRK1Q38SD2 2015 aa12.96□□□□□ -0.33
VPS33A-208ENST00000543633 TNFRSF10AO00220 468 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 KIAA0355O15063 1070 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 VEGFDO43915 354 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 B4GALT2O60909 372 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 C1QBP02746 253 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 CLEC2LP0C7M8 214 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 PRKAR1AP10644 381 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 PPM1AP35813 382 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 CCT3P49368 545 aaKnown RBP12.96□□□□□ -0.34
VPS33A-208ENST00000543633 RAB25P57735 213 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 RPS25P62851 125 aaKnown RBP12.96□□□□□ -0.34
VPS33A-208ENST00000543633 TNK1Q13470 666 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.96□□□□□ -0.34
VPS33A-208ENST00000543633 FLYWCH1Q4VC44 716 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 TMEM215Q68D42 235 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 MZT2AQ6P582 158 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 TMEM64Q6YI46 380 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 PARS2Q7L3T8 475 aaKnown RBP12.96□□□□□ -0.34
VPS33A-208ENST00000543633 PDZD3Q86UT5 571 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 IQCF1Q8N6M8 205 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 C19orf18Q8NEA5 215 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 VN1R2Q8NFZ6 395 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 TEX47Q8TBZ9 253 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 GNPDA2Q8TDQ7 276 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 RAB8BQ92930 207 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 SLC38A2Q96QD8 506 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 SERHL2Q9H4I8 314 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 ANKRD19PQ9H560 264 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 MVB12BQ9H7P6 319 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 PLXND1Q9Y4D7 1925 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 MYOFQ9NZM1 2061 aa12.96□□□□□ -0.34
VPS33A-208ENST00000543633 A6NL46 340 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 A8MV72 311 aaPredicted RBP12.95□□□□□ -0.34
VPS33A-208ENST00000543633 SGK494L7N484 410 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 SYT5O00445 386 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 CHST10O43529 356 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 TGM5O43548 720 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 UBXN7O94888 489 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 TBX6O95947 436 aaPredicted RBP12.95□□□□□ -0.34
VPS33A-208ENST00000543633 TIMP1P01033 207 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 EPHX1P07099 455 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 SYN1P17600 705 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 ALAS2P22557 587 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 MTNR1AP48039 350 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 TGM4P49221 684 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 CLDN20P56880 219 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 RACK1P63244 317 aaKnown RBP12.95□□□□□ -0.34
VPS33A-208ENST00000543633 DAB2P98082 770 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 DPTQ07507 201 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 C19orf57Q0VDD7 668 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 HSPB3Q12988 150 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 SF3A2Q15428 464 aaKnown RBP12.95□□□□□ -0.34
VPS33A-208ENST00000543633 SNAPC1Q16533 368 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 CRTC2Q53ET0 693 aaPredicted RBP12.95□□□□□ -0.34
VPS33A-208ENST00000543633 ACSM5Q6NUN0 579 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 SLC27A4Q6P1M0 643 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 TRMT11Q7Z4G4 463 aaKnown RBP12.95□□□□□ -0.34
VPS33A-208ENST00000543633 UBE2Q1Q7Z7E8 422 aa12.95□□□□□ -0.34
VPS33A-208ENST00000543633 RBM45Q8IUH3 476 aaKnown RBP12.95□□□□□ -0.34
VPS33A-208ENST00000543633 POGLUT1Q8NBL1 392 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms