RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 TNFRSF17Q02223 184 aa12.96□□□□□ -0.33
RTN3-210ENST00000540798 BNIP3Q12983 259 aa12.96□□□□□ -0.33
RTN3-210ENST00000540798 TBCEQ15813 527 aaPredicted RBP12.96□□□□□ -0.33
RTN3-210ENST00000540798 FRMPD2BQ6IN97 320 aa12.96□□□□□ -0.33
RTN3-210ENST00000540798 FCGR1BQ92637 280 aa12.96□□□□□ -0.33
RTN3-210ENST00000540798 MSANTD3Q96H12 275 aa12.96□□□□□ -0.33
RTN3-210ENST00000540798 SPATA5L1Q9BVQ7 753 aa12.96□□□□□ -0.33
RTN3-210ENST00000540798 ZNF576Q9H609 170 aa12.96□□□□□ -0.33
RTN3-210ENST00000540798 ACTR10Q9NZ32 417 aa12.96□□□□□ -0.33
RTN3-210ENST00000540798 A0A1W2PRQ8 180 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 FAM227AF5H4B4 570 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 CASC3O15234 703 aaKnown RBP12.96□□□□□ -0.34
RTN3-210ENST00000540798 FADS2O95864 444 aaKnown RBP12.96□□□□□ -0.34
RTN3-210ENST00000540798 C8orf89P0DMQ9 161 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 MAGP20916 626 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 SMIM11AP58511 58 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 PRR5P85299 388 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 DGCR6Q14129 220 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 LASP1Q14847 261 aaKnown RBP12.96□□□□□ -0.34
RTN3-210ENST00000540798 TAGAPQ8N103 731 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 OR13H1Q8NG92 308 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 RSC1A1Q92681 617 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 OR7D2Q96RA2 312 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 SERINC2Q96SA4 455 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 COPS4Q9BT78 406 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 NECTIN3Q9NQS3 549 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 TRPC4Q9UBN4 977 aa12.96□□□□□ -0.34
RTN3-210ENST00000540798 PRAMEF26H0Y7S4 382 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 SLC35G6P0C7Q6 338 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 GSTT2P0CG29 244 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 GSTT2BP0CG30 244 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 PTGER1P34995 402 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 ILKQ13418 452 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 IRF3Q14653 427 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 TCEA2Q15560 299 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 MOGQ16653 247 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 DGLUCYQ7Z3D6 616 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 CROCCP3Q8IVE0 287 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 TMCO5AQ8N6Q1 288 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 OR9A2Q8NGT5 310 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 MYDGFQ969H8 173 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 C16orf58Q96GQ5 468 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 PINK1Q9BXM7 581 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 GIMAP4Q9NUV9 329 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 POT1Q9NUX5 634 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 SLC6A14Q9UN76 642 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 KCNE3Q9Y6H6 103 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 ARHGEF17Q96PE2 2063 aaPredicted RBP12.95□□□□□ -0.34
RTN3-210ENST00000540798 NINQ8N4C6 2090 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 SH3PXD2BA1X283 911 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 MPZL2O60487 215 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 ALPPL2P10696 532 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 OSMP13725 252 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 POU2F1P14859 743 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 MC3RP41968 323 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 DCST1Q5T197 706 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 PGBD2Q6P3X8 592 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 FIGLAQ6QHK4 219 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 CD300LDQ6UXZ3 194 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 NUP43Q8NFH3 380 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 UCK2Q9BZX2 261 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 C6orf106Q9H6K1 298 aaPredicted RBP12.95□□□□□ -0.34
RTN3-210ENST00000540798 MAN2C1Q9NTJ4 1040 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 PHF11Q9UIL8 331 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 TMCC3Q9ULS5 477 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 DOLKQ9UPQ8 538 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 ZNF780BQ9Y6R6 833 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 TRBV23OR9-2A0A075B6M9 112 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 SH3D21A4FU49 640 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 SLC22A1O15245 554 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 MAN1A2O60476 641 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 CLPXO76031 633 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 TP53P04637 393 aaPredicted RBP12.95□□□□□ -0.34
RTN3-210ENST00000540798 GSSP48637 474 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 ST13P50502 369 aaKnown RBP12.95□□□□□ -0.34
RTN3-210ENST00000540798 MLLT10P55197 1068 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 SUZ12Q15022 739 aaKnown RBP12.95□□□□□ -0.34
RTN3-210ENST00000540798 HEPHL1Q6MZM0 1159 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 DEF8Q6ZN54 512 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 SZRD1Q7Z422 152 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 VANGL1Q8TAA9 524 aaPredicted RBP12.95□□□□□ -0.34
RTN3-210ENST00000540798 SLC7A13Q8TCU3 470 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 SLC38A1Q9H2H9 487 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 C3orf14Q9HBI5 128 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 EVA1BQ9NVM1 165 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 TMA7Q9Y2S6 64 aaKnown RBP12.95□□□□□ -0.34
RTN3-210ENST00000540798 ENTPD2Q9Y5L3 495 aa12.95□□□□□ -0.34
RTN3-210ENST00000540798 OR6C74A6NCV1 312 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 CLDN24A6NM45 220 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 SYT5O00445 386 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 TNFP01375 233 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 BMP8BP34820 402 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 IDH2P48735 452 aaKnown RBP12.94□□□□□ -0.34
RTN3-210ENST00000540798 PRKAG1P54619 331 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 CDC42P60953 191 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 ILF3Q12906 894 aaKnown RBP eCLIP12.94□□□□□ -0.34
RTN3-210ENST00000540798 RUNX2Q13950 521 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 KIAA0895LQ68EN5 471 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 RNF44Q7L0R7 432 aa12.94□□□□□ -0.34
RTN3-210ENST00000540798 OLIG3Q7RTU3 272 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 342.9 ms