RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 HEPACAMQ14CZ8 416 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 PRSS53Q2L4Q9 553 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 HYAL4Q2M3T9 481 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 TRMT12Q53H54 448 aaKnown RBP13.61□□□□□ -0.23
USP28-204ENST00000537642 ZNF628Q5EBL2 1059 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 FAM71E1Q6IPT2 247 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 C17orf47Q8NEP4 570 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 OR5M3Q8NGP4 307 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 FAM76AQ8TAV0 307 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.61□□□□□ -0.23
USP28-204ENST00000537642 FAM57AQ8TBR7 257 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 ZNF675Q8TD23 568 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 TCP10LQ8TDR4 215 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 TRMOQ9BU70 441 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 ITPAQ9BY32 194 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 NXF5Q9H1B4 397 aaKnown RBP13.61□□□□□ -0.23
USP28-204ENST00000537642 RRAGDQ9NQL2 400 aaPredicted RBP13.61□□□□□ -0.23
USP28-204ENST00000537642 PFDN4Q9NQP4 134 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 SLC35C2Q9NQQ7 365 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 EHD3Q9NZN3 535 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 CNIH4Q9P003 139 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 RAB21Q9UL25 225 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 MEMO1Q9Y316 297 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 POLR3HQ9Y535 204 aaPredicted RBP13.61□□□□□ -0.23
USP28-204ENST00000537642 NPFFR2Q9Y5X5 522 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 LIPGQ9Y5X9 500 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.61□□□□□ -0.23
USP28-204ENST00000537642 CACNA1DQ01668 2161 aa13.61□□□□□ -0.23
USP28-204ENST00000537642 MAST4O15021 2626 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 CAPN14A8MX76 684 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 PRRG2O14669 202 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 ADAM10O14672 748 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 NPHS1O60500 1241 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 CHRNGP07510 517 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 CELA3AP09093 270 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 ESRRAP11474 423 aaPredicted RBP13.6□□□□□ -0.23
USP28-204ENST00000537642 DDCP20711 480 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 PRPH2P23942 346 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 DCTP40126 519 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 MAGEA5P43359 124 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 EMDP50402 254 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 NRG3P56975 720 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 KCNJ2P63252 427 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 C2orf80Q0P641 193 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 KIAA0040Q15053 153 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 CEBPEQ15744 281 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 ZNF787Q6DD87 383 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 ARHGAP11AQ6P4F7 1023 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 RPTNQ6XPR3 784 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 C3P1Q6ZMU1 363 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 NCCRP1Q6ZVX7 275 aaPredicted RBP13.6□□□□□ -0.23
USP28-204ENST00000537642 MRGPRGQ86SM5 289 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 CD163Q86VB7 1156 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 PRR22Q8IZ63 422 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 FAM109AQ8N4B1 249 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 ZNF808Q8N4W9 903 aaPredicted RBP13.6□□□□□ -0.23
USP28-204ENST00000537642 OR52R1Q8NGF1 315 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 OR9A2Q8NGT5 310 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 CDC26Q8NHZ8 85 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 SMC6Q96SB8 1091 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 TUBB1Q9H4B7 451 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 MYNNQ9NPC7 610 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 EXO1Q9UQ84 846 aaKnown RBP13.6□□□□□ -0.23
USP28-204ENST00000537642 ENTPD4Q9Y227 616 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 CFL2Q9Y281 166 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 FIS1Q9Y3D6 152 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 HRH3Q9Y5N1 445 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 UNC79Q9P2D8 2635 aa13.6□□□□□ -0.23
USP28-204ENST00000537642 LRRC3CA6NJW4 275 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 NPIPB8E9PQR5 432 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 SLC28A1O00337 649 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 TYROBPO43914 113 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 IGHG3P01860 377 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 TPOP07202 933 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 RFPL3SP0C7P2 107 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 ABCD3P28288 659 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 ZNF844Q08AG5 666 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 RPS6KA2Q15349 733 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 NNATQ16517 81 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 KRT71Q3SY84 523 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 KANK2Q63ZY3 851 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 BICRALQ6AI39 1079 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 NOXRED1Q6NXP6 359 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 PAOXQ6QHF9 649 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 RNF165Q6ZSG1 346 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 Q6ZSR9 355 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 ZCCHC23Q6ZST2 131 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 SAMD14Q8IZD0 417 aaPredicted RBP13.59□□□□□ -0.23
USP28-204ENST00000537642 OR2T11Q8NH01 316 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 SPPL2AQ8TCT8 520 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 DIO2Q92813 273 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 KAT2AQ92830 837 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 METTL2AQ96IZ6 378 aaKnown RBP13.59□□□□□ -0.23
USP28-204ENST00000537642 LCORQ96JN0 433 aaPredicted RBP13.59□□□□□ -0.23
USP28-204ENST00000537642 DMRTA2Q96SC8 542 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 ANKRA2Q9H9E1 313 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 ZFP64Q9NPA5 681 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 GIMAP4Q9NUV9 329 aa13.59□□□□□ -0.23
USP28-204ENST00000537642 BOKQ9UMX3 212 aaPredicted RBP13.59□□□□□ -0.23
USP28-204ENST00000537642 CACNA1CQ13936 2221 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms