RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MS4A4EQ96PG1 132 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 BTBD2Q9BX70 525 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 CHRNA10Q9GZZ6 450 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 KRT84Q9NSB2 600 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 LRIT1Q9P2V4 623 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 DNAH14Q0VDD8 3507 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 A0A087WXM4 84 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 IGHV5-51A0A0C4DH38 117 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 SMIM31A0A1B0GVY4 71 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 TLCD2A6NGC4 264 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 FOXS1O43638 330 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 SEMA7AO75326 666 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 NME6O75414 186 aaPredicted RBP19.41■□□□□ 0.7
VPS28-209ENST00000528142 BMP10O95393 424 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 RYKP34925 604 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 CTSKP43235 329 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 FNTBP49356 437 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 CLK3P49761 638 aaKnown RBP19.41■□□□□ 0.7
VPS28-209ENST00000528142 BNIP3Q12983 259 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 MICAQ29983 383 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 COMTD1Q86VU5 262 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 SIMC1Q8NDZ2 872 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 OR4D11Q8NGI4 311 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 FBLIM1Q8WUP2 373 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 ANKRD9Q96BM1 317 aaPredicted RBP19.41■□□□□ 0.7
VPS28-209ENST00000528142 SLC35A4Q96G79 324 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 RIBC2Q9H4K1 309 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 GIN1Q9NXP7 522 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 KIF17Q9P2E2 1029 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 LIPT1Q9Y234 373 aa19.41■□□□□ 0.7
VPS28-209ENST00000528142 BCKDKO14874 412 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 CHST10O43529 356 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 CDH2P19022 906 aaPredicted RBP19.4■□□□□ 0.7
VPS28-209ENST00000528142 ALDH3B2P48448 385 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 CD47Q08722 323 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 TRMT12Q53H54 448 aaKnown RBP19.4■□□□□ 0.7
VPS28-209ENST00000528142 NKAIN2Q5VXU1 208 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 LAIR2Q6ISS4 152 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 TCTN3Q6NUS6 607 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 CDC73Q6P1J9 531 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 SLC5A8Q8N695 610 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 OR10G2Q8NGC3 310 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 ADAMTS16Q8TE57 1224 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 TRNT1Q96Q11 434 aaKnown RBP19.4■□□□□ 0.7
VPS28-209ENST00000528142 FEVQ99581 238 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 PSD2Q9BQI7 771 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 WFDC6Q9BQY6 131 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 SPATA5L1Q9BVQ7 753 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 ING2Q9H160 280 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 NDUFA13Q9P0J0 144 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 C19orf53Q9UNZ5 99 aaPredicted RBP19.4■□□□□ 0.7
VPS28-209ENST00000528142 PLCL2Q9UPR0 1127 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 TMEM131Q92545 1883 aa19.4■□□□□ 0.7
VPS28-209ENST00000528142 DSPPQ9NZW4 1301 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 A0A0A6YYC8 382 aaPredicted RBP19.39■□□□□ 0.7
VPS28-209ENST00000528142 A8MVJ9 347 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 I3L1I5 382 aaPredicted RBP19.39■□□□□ 0.7
VPS28-209ENST00000528142 EPPINO95925 133 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 ALDH4A1P30038 563 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 IL1RL1Q01638 556 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 BNC1Q01954 994 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 KEAP1Q14145 624 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 SHBQ15464 509 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 CTU2Q2VPK5 515 aaKnown RBP19.39■□□□□ 0.7
VPS28-209ENST00000528142 GPAT3Q53EU6 434 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 HEPHL1Q6MZM0 1159 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 TTC29Q8NA56 475 aaPredicted RBP19.39■□□□□ 0.7
VPS28-209ENST00000528142 CHDHQ8NE62 594 aaPredicted RBP19.39■□□□□ 0.7
VPS28-209ENST00000528142 NCSTNQ92542 709 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 ZDHHC12Q96GR4 267 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 CD180Q99467 661 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 SLC38A1Q9H2H9 487 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 PRMT8Q9NR22 394 aaPredicted RBP19.39■□□□□ 0.7
VPS28-209ENST00000528142 RLIMQ9NVW2 624 aa19.39■□□□□ 0.7
VPS28-209ENST00000528142 A0A087WV62 115 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 DUXAA6NLW8 204 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 PCDH17O14917 1159 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 NUDT21O43809 227 aaKnown RBP19.39■□□□□ 0.69
VPS28-209ENST00000528142 OR6B1O95007 311 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 GADD45GO95257 159 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 IFI6P09912 130 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 ANXA8P13928 327 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 MLLT3P42568 568 aaPredicted RBP19.39■□□□□ 0.69
VPS28-209ENST00000528142 RPS6KA3P51812 740 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 MGAT2Q10469 447 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 RAPSNQ13702 412 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 GANABQ14697 944 aaKnown RBP19.39■□□□□ 0.69
VPS28-209ENST00000528142 NDUFA9Q16795 377 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 EXOSC6Q5RKV6 272 aaKnown RBP19.39■□□□□ 0.69
VPS28-209ENST00000528142 WDR53Q7Z5U6 358 aaPredicted RBP19.39■□□□□ 0.69
VPS28-209ENST00000528142 RBM45Q8IUH3 476 aaKnown RBP19.39■□□□□ 0.69
VPS28-209ENST00000528142 LACC1Q8IV20 430 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 SLC16A11Q8NCK7 471 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 ADAMTS15Q8TE58 950 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 HDAC2Q92769 488 aaKnown RBP19.39■□□□□ 0.69
VPS28-209ENST00000528142 GABARAPL3Q9BY60 117 aa19.39■□□□□ 0.69
VPS28-209ENST00000528142 NDRG4Q9ULP0 352 aaKnown RBP19.39■□□□□ 0.69
VPS28-209ENST00000528142 SPAG17Q6Q759 2223 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 ZDBF2Q9HCK1 2354 aa19.38■□□□□ 0.69
VPS28-209ENST00000528142 TMEM221A6NGB7 291 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms