RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), human

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-222	ENST00000526025	GPX3	P22352	226 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	IL12A	P29459	219 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	S100A3	P33764	101 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	TRHR	P34981	398 aa	Predicted RBP	19.25	■□□□□ 0.67
CD44-222	ENST00000526025	PSPH	P78330	225 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	MRPS35	P82673	323 aa	Known RBP	19.25	■□□□□ 0.67
CD44-222	ENST00000526025	HSPB3	Q12988	150 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	PGS1	Q32NB8	556 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	FAM174B	Q3ZCQ3	159 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	SPANXN4	Q5MJ08	99 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	TMEM64	Q6YI46	380 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	SLC15A4	Q8N697	577 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	ZNF441	Q8N8Z8	693 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	OR7G2	Q8NG99	324 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	C16orf52	Q8NHV5	167 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	HAS2	Q92819	552 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	KAT2A	Q92830	837 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	WWTR1	Q9GZV5	400 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	SLC25A18	Q9H1K4	315 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	ZNF385D	Q9H6B1	395 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	TP53TG5	Q9Y2B4	290 aa		19.25	■□□□□ 0.67
CD44-222	ENST00000526025	YARS2	Q9Y2Z4	477 aa	Known RBP	19.25	■□□□□ 0.67
CD44-222	ENST00000526025	COPG1	Q9Y678	874 aa	Known RBP	19.25	■□□□□ 0.67
CD44-222	ENST00000526025	FAM234B	A2RU67	622 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	DPM1	O60762	260 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	PGR	P06401	933 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	MC3R	P41968	323 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	ZFP36L2	P47974	494 aa	Known RBP	19.24	■□□□□ 0.67
CD44-222	ENST00000526025	EMD	P50402	254 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	NME5	P56597	212 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	DCAF7	P61962	342 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	DUSP8	Q13202	625 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	B3GNTL1	Q67FW5	361 aa	Predicted RBP	19.24	■□□□□ 0.67
CD44-222	ENST00000526025	OR4F3	Q6IEY1	312 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	TMEM107	Q6UX40	140 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	ASB18	Q6ZVZ8	466 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	OR52R1	Q8NGF1	315 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	NUDT8	Q8WV74	236 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	C10orf82	Q8WW14	230 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	MOAP1	Q96BY2	351 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	CDCP1	Q9H5V8	836 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	TRIM45	Q9H8W5	580 aa	Predicted RBP	19.24	■□□□□ 0.67
CD44-222	ENST00000526025	C3orf14	Q9HBI5	128 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	DDX18	Q9NVP1	670 aa	Known RBP	19.24	■□□□□ 0.67
CD44-222	ENST00000526025	TAS2R9	Q9NYW1	312 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	STMN3	Q9NZ72	180 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	BCAP29	Q9UHQ4	241 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	BTNL2	Q9UIR0	455 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	EXPH5	Q8NEV8	1989 aa		19.24	■□□□□ 0.67
CD44-222	ENST00000526025	COL6A6	A6NMZ7	2263 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	TTC36	A6NLP5	189 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	UPK1A	O00322	258 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	PDGFA	P04085	211 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	PTGER1	P34995	402 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	GPC1	P35052	558 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	POLR2J	P52435	117 aa	Known RBP	19.23	■□□□□ 0.67
CD44-222	ENST00000526025	SEC24C	P53992	1094 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	PHC1	P78364	1004 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	RCAN2	Q14206	197 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	EXOSC7	Q15024	291 aa	Known RBP	19.23	■□□□□ 0.67
CD44-222	ENST00000526025	PAOX	Q6QHF9	649 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	GPALPP1	Q8IXQ4	340 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	BEST3	Q8N1M1	668 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	CPSF7	Q8N684	471 aa	Known RBP	19.23	■□□□□ 0.67
CD44-222	ENST00000526025	SFXN5	Q8TD22	340 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	DOK4	Q8TEW6	326 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	ADIPOR1	Q96A54	375 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	CCDC115	Q96NT0	180 aa		19.23	■□□□□ 0.67
CD44-222	ENST00000526025	SIRT3	Q9NTG7	399 aa	Predicted RBP	19.23	■□□□□ 0.67
CD44-222	ENST00000526025	HEMK1	Q9Y5R4	338 aa	Predicted RBP	19.23	■□□□□ 0.67
CD44-222	ENST00000526025	C2orf92	A0A1B0GVN3	265 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	DYTN	A2CJ06	578 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	EMC8	O43402	210 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	ITGA10	O75578	1167 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	C6orf47	O95873	294 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	DRD4	P21917	467 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	CDK9	P50750	372 aa	Known RBP	19.22	■□□□□ 0.67
CD44-222	ENST00000526025	PRR5	P85299	388 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	PIGG	Q5H8A4	983 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	HLA-DQA1	Q5Y7H0	255 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	FCRLB	Q6BAA4	426 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	LINC00696	Q6ZRV3	163 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	SPATA21	Q7Z572	469 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	DND1	Q8IYX4	353 aa	Known RBP	19.22	■□□□□ 0.67
CD44-222	ENST00000526025	ZADH2	Q8N4Q0	377 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	GOT1L1	Q8NHS2	421 aa	Predicted RBP	19.22	■□□□□ 0.67
CD44-222	ENST00000526025	SLC22A8	Q8TCC7	542 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	HOXB13	Q92826	284 aa	Predicted RBP	19.22	■□□□□ 0.67
CD44-222	ENST00000526025	VSTM2L	Q96N03	204 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	BTBD9	Q96Q07	612 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	PCDHGB4	Q9UN71	923 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	CHD6	Q8TD26	2715 aa		19.22	■□□□□ 0.67
CD44-222	ENST00000526025	BSN	Q9UPA5	3926 aa		19.21	■□□□□ 0.67
CD44-222	ENST00000526025		K7EM74	188 aa		19.21	■□□□□ 0.67
CD44-222	ENST00000526025	ACOX3	O15254	700 aa		19.21	■□□□□ 0.67
CD44-222	ENST00000526025	MAN1A2	O60476	641 aa		19.21	■□□□□ 0.67
CD44-222	ENST00000526025	NCF2	P19878	526 aa	Predicted RBP	19.21	■□□□□ 0.67
CD44-222	ENST00000526025	DRD5	P21918	477 aa		19.21	■□□□□ 0.67
CD44-222	ENST00000526025	CASR	P41180	1078 aa		19.21	■□□□□ 0.67
CD44-222	ENST00000526025	PPIC	P45877	212 aa		19.21	■□□□□ 0.67

Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms