RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MSCO60682 206 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 SRPX2O60687 465 aaPredicted RBP10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 PBX2P40425 430 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 ETV3P41162 512 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 NR0B1P51843 470 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 SRPXP78539 464 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 PLAG1Q6DJT9 500 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 LPCAT3Q6P1A2 487 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 BLOC1S3Q6QNY0 202 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 CPA6Q8N4T0 437 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 CCM2Q9BSQ5 444 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 MIR1-1HGQ9H1L0 117 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 WIF1Q9Y5W5 379 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 WASH4PA8MWX3 477 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 ANKRD28O15084 1053 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 ARPC1BO15143 372 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 APODP05090 189 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF30P17039 623 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 DRD5P21918 477 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 RXRBP28702 533 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 DDOSTP39656 456 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 ERVK-16P61578 105 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 CEACAM7Q14002 265 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 EID2Q8N6I1 236 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 OR5D16Q8NGK9 328 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 NICN1Q9BSH3 213 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 TGIF2Q9GZN2 237 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 PATZ1Q9HBE1 687 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 MAN2C1Q9NTJ4 1040 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 TRPM1Q7Z4N2 1603 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 NEMP2A6NFY4 417 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 HLA-HP01893 362 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 NUMBP49757 651 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 SGCBQ16585 318 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 CORO6Q6QEF8 472 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 LINGO4Q6UY18 593 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 OR5T1Q8NG75 326 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 OR1M1Q8NGA1 313 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 OR10K1Q8NGX5 313 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 TSSK2Q96PF2 358 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 ARPC5LQ9BPX5 153 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 GSX2Q9BZM3 304 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 CD244Q9BZW8 370 aa10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 RBFOX1Q9NWB1 397 aaKnown RBP10.74□□□□□ -0.69
LIMCH1-217ENST00000512946 SEC14L5O43304 696 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 FKTNO75072 461 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 EGFP01133 1207 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SERPINE2P07093 398 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 POLR2CP19387 275 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 EDNRBP24530 442 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 HCCSP53701 268 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 RAB40BQ12829 278 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CDK5R2Q13319 367 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 UBXN2BQ14CS0 331 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 LBHQ53QV2 105 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC18B1Q6NT16 456 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TSSK4Q6SA08 328 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TMIGD1Q6UXZ0 262 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 THOC6Q86W42 341 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 IL21RQ9HBE5 538 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 LSM5Q9Y4Y9 91 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CD163L1Q9NR16 1453 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3DA0A087WVF3 549 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3IA0A087WXS9 549 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3EA0A087X179 549 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3KA0A087X1G2 549 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3FA6NER0 549 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 IQCF5A8MTL0 148 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3LB9A6J9 549 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 IRAK2O43187 625 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 MED6O75586 246 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 STK17BO94768 372 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3HP0C7X1 549 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 BMP1P13497 986 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SPI1P17947 270 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CD53P19397 219 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 DAOAP59103 153 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CSNK2A1P68400 391 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 POU6F2P78424 691 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 IL13RA1P78552 427 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC6A19Q695T7 634 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3GQ6DHY5 549 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3CQ6IPX1 549 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 NAA40Q86UY6 237 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TBC1D3Q8IZP1 549 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 C12orf29Q8N999 325 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CSNK2A3Q8NEV1 391 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 OR4K17Q8NGC6 315 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 ZNF461Q8TAF7 563 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SLC28A3Q9HAS3 691 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 NOX3Q9HBY0 568 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 TMEM39AQ9NV64 488 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 DMAC2Q9NW81 257 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 A0A1W2PQH9 124 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 hCG_1807616A0A1W2PRN6 198 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CD8B2A6NJW9 211 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 FOXO6A8MYZ6 492 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 SPATA31C2B4DYI2 1134 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 KLK1P06870 262 aa10.73□□□□□ -0.69
LIMCH1-217ENST00000512946 CD8BP10966 210 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms