RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 NKD2Q969F2 451 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 YIPF5Q969M3 257 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SLAMF9Q96A28 289 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 GNPNAT1Q96EK6 184 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 LINGO1Q96FE5 620 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 KATNB1Q9BVA0 655 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 THAP2Q9H0W7 228 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 POLR2J3Q9H1A7 115 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 ARV1Q9H2C2 271 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ZBTB3Q9H5J0 574 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 UBTD1Q9HAC8 227 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ISYNA1Q9NPH2 558 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 MKKSQ9NPJ1 570 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 SDHAF3Q9NRP4 125 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 RNF146Q9NTX7 359 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PIGVQ9NUD9 493 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 DOK5Q9P104 306 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 NOCTQ9UK39 431 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 GJD2Q9UKL4 321 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ELF5Q9UKW6 265 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 ZDHHC8Q9ULC8 765 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 TBX20Q9UMR3 447 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 USP18Q9UMW8 372 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 KLK4Q9Y5K2 254 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 UBIAD1Q9Y5Z9 338 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 COL1A1P02452 1464 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 TRAV20A0A0B4J274 112 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 IQCMA0A1B0GVH7 501 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 LOC285095A0A1B0GVY8 99 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 OR6C74A6NCV1 312 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 NCF1CA8MVU1 366 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 EEF1E1-BLOC1S5C9J1V9 151 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 USP17L12C9JPN9 530 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 USP17L21D6R901 530 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 FAM86B1E9PN63 330 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 hCG_2039718K7EN88 272 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 TPST2O60704 377 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 RAD51DO75771 328 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 HTR1AP08908 422 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 FAM86B2P0C5J1 330 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CD8BP10966 210 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ADH5P11766 374 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 USF1P22415 310 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 TM4SF1P30408 202 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ADORA1P30542 326 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 GCH1P30793 250 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CX3CR1P49238 355 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CCR6P51684 374 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CLCNKBP51801 687 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 RAG2P55895 527 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ERVS71-1P61550 626 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PSPHP78330 225 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SMAD3P84022 425 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 KCNC4Q03721 635 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 OR5I1Q13606 314 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SNRNP35Q16560 246 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 CYP1B1Q16678 543 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SPIN4Q56A73 249 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 TMEM97Q5BJF2 176 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ARL13AQ5H913 290 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 OGFOD2Q6N063 350 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 TRNP1Q6NT89 227 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ZNF790Q6PG37 636 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CHSY3Q70JA7 882 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SPPL2CQ8IUH8 684 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 HS3ST5Q8IZT8 346 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CARFQ8N187 725 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 FAM86B1Q8N7N1 296 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 LINC00469Q8N7U9 141 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PTGR2Q8N8N7 351 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 FAM83FQ8NEG4 500 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 OR4F6Q8NGB9 312 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 TWIST2Q8WVJ9 160 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 DDX1Q92499 740 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 ZNF566Q969W8 418 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ATXN7L3BQ96GX2 97 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PYURFQ96I23 114 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 ZNF845Q96IR2 970 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 KCNC2Q96PR1 638 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PURBQ96QR8 312 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 PEBP4Q96S96 227 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CGRRF1Q99675 332 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 AP5M1Q9H0R1 490 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 DDX31Q9H8H2 851 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 ELP3Q9H9T3 547 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 LRTM1Q9HBL6 345 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SMOXQ9NWM0 555 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 SCML2Q9UQR0 700 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 TGIF2-C20orf24A0A0A6YYL0 155 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 SLC22A31A6NKX4 558 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 K7EPK0 472 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 RTCAO00442 366 aaKnown RBP3.42□□□□□ -1.86
USP53-205ENST00000509769 ST8SIA5O15466 376 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 TREHO43280 583 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 PMS2P2O95744 297 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 FGF1P05230 155 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 BCKDHBP21953 392 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 HTR1BP28222 390 aa3.42□□□□□ -1.86
USP53-205ENST00000509769 CRABP1P29762 137 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms