RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 M0R3H8 397 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PRKYO43930 277 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SH3BP5O60239 455 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 EPPINO95925 133 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TIE1P35590 1138 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CCR8P51685 355 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 DEFA1P59665 94 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 DEFA3P59666 94 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LSM11P83369 360 aaKnown RBP eCLIP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ALDH6A1Q02252 535 aaKnown RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ARHGAP19Q14CB8 494 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FLCNQ8NFG4 579 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PROKR2Q8NFJ6 384 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR5D16Q8NGK9 328 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZBED6CLQ96FA7 236 aaPredicted RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZNF764Q96H86 408 aaPredicted RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR2A14Q96R47 310 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZNF607Q96SK3 696 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MND1Q9BWT6 205 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 AICDAQ9GZX7 198 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RACGAP1Q9H0H5 632 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR51I1Q9H343 314 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MAN2C1Q9NTJ4 1040 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ACSS1Q9NUB1 689 aaPredicted RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NDUFB11Q9NX14 153 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TMA7Q9Y2S6 64 aaKnown RBP15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 V9GYH0 126 aa15.19■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 EDDM13A0A1B0GTR0 161 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 WASHC1A8K0Z3 465 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PPM1DO15297 605 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NDUFS4O43181 175 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ASNA1O43681 348 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LCMT2O60294 686 aaKnown RBP15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TPST2O60704 377 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TNNI3P19429 210 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CXCR2P25025 360 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SF3B4Q15427 424 aaKnown RBP eCLIP15.18■□□□□ 0.029e-7■■■□□ 15.5
MSH5-SAPCD1-208ENST00000498473 GAB4Q2WGN9 574 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FLYWCH1Q4VC44 716 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 WASH2PQ6VEQ5 465 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NUDT13Q86X67 352 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GRAMD2AQ8IUY3 354 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 IL17RCQ8NAC3 791 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CEP19Q96LK0 163 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GPA33Q99795 319 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RPP25Q9BUL9 199 aaKnown RBP15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 S1PR5Q9H228 398 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NT5DC2Q9H857 520 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TVP23BQ9NYZ1 205 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MUTYHQ9UIF7 546 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 STUB1Q9UNE7 303 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RBMX2Q9Y388 322 aaKnown RBP15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 F5P12259 2224 aa15.18■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 A0A1W2PRQ8 180 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 HYKKA2RU49 373 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZNF670-ZNF695F2Z2N8 137 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 HNRNPA1P09651 372 aaKnown RBP eCLIP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MMP11P24347 488 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TGM4P49221 684 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 EFNB1P98172 346 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MLC1Q15049 377 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CD300LDQ6UXZ3 194 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZER1Q7Z7L7 766 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 KRT73Q86Y46 540 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PHC2Q8IXK0 858 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 FAM26EQ8N5C1 309 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GPR151Q8TDV0 419 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RASSF5Q8WWW0 418 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RGMAQ96B86 450 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 QRFPRQ96P65 431 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LGR4Q9BXB1 951 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 POLR2J2Q9GZM3 115 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 GLIPR2Q9H4G4 154 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MOV10Q9HCE1 1003 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 TAS2R7Q9NYW3 318 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 A0A0G2JN53 185 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ANTXRLA6NF34 631 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OTOL1A6NHN0 477 aaPredicted RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 PSMA1P25786 263 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 RCVRNP35243 200 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 NKX2-5P52952 324 aaPredicted RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SMIM11AP58511 58 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MLLT11Q13015 90 aaPredicted RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ELAVL3Q14576 367 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ZMAT1Q5H9K5 638 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SLC25A30Q5SVS4 291 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 METRNLQ641Q3 311 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ACSM5Q6NUN0 579 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 ADAMTSL4Q6UY14 1074 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 LINC01555Q8NAE3 123 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 OR52I1Q8NGK6 324 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 XAGE5Q8WWM1 108 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SLC35G5Q96KT7 338 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 MYADMQ96S97 322 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 CDCA3Q99618 268 aaPredicted RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 POLDIP3Q9BY77 421 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 DDX31Q9H8H2 851 aaKnown RBP15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SIAEQ9HAT2 523 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 KCNK12Q9HB15 430 aa15.17■□□□□ 0.02
MSH5-SAPCD1-208ENST00000498473 SNTG1Q9NSN8 517 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms