RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 SOX18P35713 384 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 PUM1Q14671 1186 aaKnown RBP eCLIP12.73□□□□□ -0.37
GPC1-209ENST00000495100 TIMM50Q3ZCQ8 353 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 SNAP47Q5SQN1 464 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 ACSM5Q6NUN0 579 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 TECPR1Q7Z6L1 1165 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 TRIM69Q86WT6 500 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 KLBQ86Z14 1044 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 NRMQ8IXM6 262 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 ITFG2Q969R8 447 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 RGMAQ96B86 450 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 CCDC3Q9BQI4 270 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 SLIRPQ9GZT3 109 aaKnown RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 USP36Q9P275 1121 aaKnown RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 INSL6Q9Y581 213 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 SLC5A10A0PJK1 596 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 CENPXA8MT69 81 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 H0YIV9 168 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 UPK1BO75841 260 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 PGDP52209 483 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 ZNF91Q05481 1191 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 TBRG1Q3YBR2 411 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 SYT6Q5T7P8 510 aaPredicted RBP12.72□□□□□ -0.37
GPC1-209ENST00000495100 LYSMD2Q8IV50 215 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 DCUN1D3Q8IWE4 304 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 TIGD4Q8IY51 512 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 FGF13Q92913 245 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 DPEP2Q9H4A9 486 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 PAQR5Q9NXK6 330 aaPredicted RBP12.72□□□□□ -0.37
GPC1-209ENST00000495100 SPHK1Q9NYA1 384 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 CACNA1GO43497 2377 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 TRAV6A0A075B6T7 132 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 GZMMP51124 257 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 VEZF1Q14119 521 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 NXNL2Q5VZ03 156 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 UBTD2Q8WUN7 234 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 RIPOR3Q96MK2 946 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 SECISBP2Q96T21 854 aaKnown RBP12.72□□□□□ -0.37
GPC1-209ENST00000495100 CDADC1Q9BWV3 514 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 CPEB1Q9BZB8 566 aaKnown RBP12.72□□□□□ -0.37
GPC1-209ENST00000495100 ZBP1Q9H171 429 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 TP63Q9H3D4 680 aaPredicted RBP12.72□□□□□ -0.37
GPC1-209ENST00000495100 MUTYHQ9UIF7 546 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 A0A1W2PQ09 198 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 A0A1W2PQU0 124 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 A8MUA0 341 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 ARHGEF15O94989 841 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 P2RY2P41231 377 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 CDH11P55287 796 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 ELAVL3Q14576 367 aaKnown RBP12.72□□□□□ -0.37
GPC1-209ENST00000495100 OXA1LQ15070 435 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 WSCD2Q2TBF2 565 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 SFTPA2Q8IWL1 248 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 RSPRY1Q96DX4 576 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 INSM2Q96T92 566 aaPredicted RBP12.72□□□□□ -0.37
GPC1-209ENST00000495100 FAIM2Q9BWQ8 316 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 ZDHHC5Q9C0B5 715 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 C1GALT1Q9NS00 363 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 NLKQ9UBE8 527 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 P2RX2Q9UBL9 471 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 ZNF221Q9UK13 617 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 UGT2A1Q9Y4X1 527 aa12.72□□□□□ -0.37
GPC1-209ENST00000495100 RNASET2O00584 256 aaKnown RBP12.71□□□□□ -0.37
GPC1-209ENST00000495100 JUNBP17275 347 aaPredicted RBP12.71□□□□□ -0.37
GPC1-209ENST00000495100 UQCRC2P22695 453 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 FAM78AQ5JUQ0 283 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 TCTN3Q6NUS6 607 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 SYCE2Q6PIF2 218 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 CPXM2Q8N436 756 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 ATP6V1C2Q8NEY4 427 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 OR4D11Q8NGI4 311 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 MMP27Q9H306 513 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 NEK6Q9HC98 313 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 COQ3Q9NZJ6 369 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 PEX16Q9Y5Y5 336 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 PRRC2CQ9Y520 2896 aaKnown RBP12.71□□□□□ -0.37
GPC1-209ENST00000495100 RALGAPA2Q2PPJ7 1873 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 OR6C70A6NIJ9 312 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 RHCEP18577 417 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 APEX1P27695 318 aaKnown RBP12.71□□□□□ -0.37
GPC1-209ENST00000495100 CD79BP40259 229 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 TANGO2Q6ICL3 276 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 DNAJB8Q8NHS0 232 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 COQ8BQ96D53 544 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 TMEM80Q96HE8 168 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 RPP25Q9BUL9 199 aaKnown RBP12.71□□□□□ -0.37
GPC1-209ENST00000495100 BHLHE41Q9C0J9 482 aaPredicted RBP12.71□□□□□ -0.37
GPC1-209ENST00000495100 SYNDIG1Q9H7V2 258 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 SMURF1Q9HCE7 757 aa12.71□□□□□ -0.37
GPC1-209ENST00000495100 VPS13AQ96RL7 3174 aa12.71□□□□□ -0.38
GPC1-209ENST00000495100 KAT7O95251 611 aa12.71□□□□□ -0.38
GPC1-209ENST00000495100 CXCR2P25025 360 aa12.71□□□□□ -0.38
GPC1-209ENST00000495100 ERV3-1Q14264 604 aa12.71□□□□□ -0.38
GPC1-209ENST00000495100 PLAG1Q6DJT9 500 aa12.71□□□□□ -0.38
GPC1-209ENST00000495100 PLBD1Q6P4A8 553 aa12.71□□□□□ -0.38
GPC1-209ENST00000495100 PLET1Q6UQ28 207 aa12.71□□□□□ -0.38
GPC1-209ENST00000495100 ZNF517Q6ZMY9 492 aaPredicted RBP12.71□□□□□ -0.38
GPC1-209ENST00000495100 OR56A3Q8NH54 315 aa12.71□□□□□ -0.38
GPC1-209ENST00000495100 ADAMTS16Q8TE57 1224 aa12.71□□□□□ -0.38
GPC1-209ENST00000495100 ORAI1Q96D31 301 aa12.71□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms