RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 GP1BBP13224 206 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CD59P13987 128 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 AREGP15514 252 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CAPN2P17655 700 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 ELAVL4P26378 380 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CEACAM8P31997 349 aaPredicted RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 GCLMP48507 274 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CAMLGP49069 296 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 ACOT2P49753 483 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 KLK7P49862 253 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 DNA2P51530 1060 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 HNRNPFP52597 415 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 AP3M2P53677 418 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 RPP38P78345 283 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 MRPS6P82932 125 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 ZXDBP98169 803 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 MYL7Q01449 175 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CYP24A1Q07973 514 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 MGAT3Q09327 533 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 GPR17Q13304 367 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 KYAT1Q16773 422 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 EXOC3L4Q17RC7 722 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TAF1BQ53T94 588 aaPredicted RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TECRLQ5HYJ1 363 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 OR4C11Q6IEV9 310 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 OR6B2Q6IFH4 312 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 B3GLCTQ6Y288 498 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 WDR88Q6ZMY6 472 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CPEB2Q7Z5Q1 589 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 C5orf24Q7Z6I8 188 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 ADAMTSL2Q86TH1 951 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 NFE4Q86UQ8 179 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 NLRP14Q86W24 1093 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CDR2LQ86X02 465 aaPredicted RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CD302Q8IX05 232 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TEX9Q8N6V9 391 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 ZNF397Q8NF99 534 aaPredicted RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TMEM185AQ8NFB2 350 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 OR8K1Q8NGG5 319 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 LMO3Q8TAP4 145 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 HAS2Q92819 552 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CCDC127Q96BQ5 260 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 ALG14Q96F25 216 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 THOC3Q96J01 351 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CRACR2AQ9BSW2 395 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TMEM117Q9H0C3 514 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CARD9Q9H257 536 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 ASB7Q9H672 318 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 GPN1Q9HCN4 374 aaPredicted RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CD93Q9NPY3 652 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 PPANQ9NQ55 473 aaKnown RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 AGPAT5Q9NUQ2 364 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 RBAKQ9NYW8 714 aaPredicted RBP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP3.6□□□□□ -1.83
PTCD3-216ENST00000487043 OR6C2Q9NZP2 312 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 PSORS1C1Q9UIG5 152 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 TSPAN16Q9UKR8 245 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 GINS2Q9Y248 185 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 SH3GLB1Q9Y371 365 aa3.6□□□□□ -1.83
PTCD3-216ENST00000487043 CACNA1IQ9P0X4 2223 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 RGSL1A5PLK6 1076 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CFAP73A6NFT4 308 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 ARHGAP42A6NI28 874 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 SNURFLB1AK76 121 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 SLC22A2O15244 555 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 SMAD6O43541 496 aaKnown RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CIDEAO60543 219 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 DFFBO76075 338 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TGFAP01135 160 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 RAF1P04049 648 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 YES1P07947 543 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CLTAP09496 248 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TRIM49P0CI25 452 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TRIM49CP0CI26 452 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 T-ENOLP0DO92 83 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 SKILP12757 684 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 EZRP15311 586 aaKnown RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 UCHL3P15374 230 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TNNI1P19237 187 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 HNRNPH3P31942 346 aaKnown RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TNFSF9P41273 254 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 OR3A3P47888 321 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CNN1P51911 297 aaKnown RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 GMFBP60983 142 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 OSTNP61366 133 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 HERV-K104P61576 105 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CCZ1BP86790 482 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CCZ1P86791 482 aaPredicted RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 CDR2Q01850 454 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TSTA3Q13630 321 aaPredicted RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 GAMTQ14353 236 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 GK2Q14410 553 aaPredicted RBP3.59□□□□□ -1.83
PTCD3-216ENST00000487043 EXT1Q16394 746 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 DCAF4L1Q3SXM0 396 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 EPC2Q52LR7 807 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 PRAMEF7Q5VXH5 474 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 SPSB3Q6PJ21 355 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 TRIM65Q6PJ69 517 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 DHRS11Q6UWP2 260 aa3.59□□□□□ -1.83
PTCD3-216ENST00000487043 SLC24A5Q71RS6 500 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms