RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 OR2L2Q8NH16 312 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 ZNF431Q8TF32 576 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-228ENST00000486227 ZDHHC1Q8WTX9 485 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 GPR78Q96P69 363 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 MACROD1Q9BQ69 325 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 TMEM184CQ9NVA4 438 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 GRXCR2A6NFK2 248 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 PCDHGA12O60330 932 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 CACNG3O60359 315 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 ZNF821O75541 412 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-228ENST00000486227 PEPDP12955 493 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 RCVRNP35243 200 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 DCTP40126 519 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 RNF144AP50876 292 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-228ENST00000486227 RPS15AP62244 130 aaKnown RBP10.48□□□□□ -0.73
HDAC6-228ENST00000486227 ZNF33BQ06732 778 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 CCSAPQ6IQ19 270 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-228ENST00000486227 P4HA3Q7Z4N8 544 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 GPR149Q86SP6 731 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 GALNT6Q8NCL4 622 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 TMEM203Q969S6 136 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 MUL1Q969V5 352 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 SLC25A36Q96CQ1 311 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 PTCHD1Q96NR3 888 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 PDFQ9HBH1 243 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 DMRT3Q9NQL9 472 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 PCDHGA3Q9Y5H0 932 aa10.48□□□□□ -0.73
HDAC6-228ENST00000486227 RP1L1Q8IWN7 2480 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-228ENST00000486227 WNK3Q9BYP7 1800 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 SEC14L2O76054 403 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 CR2P20023 1033 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 LHCGRP22888 699 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 IRF4Q15306 451 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 RPTNQ6XPR3 784 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 Q6ZSR6 202 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 MSANTD1Q6ZTZ1 278 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 PAPD5Q8NDF8 572 aaKnown RBP10.47□□□□□ -0.73
HDAC6-228ENST00000486227 OR52N2Q8NGI0 321 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.47□□□□□ -0.73
HDAC6-228ENST00000486227 CIDECQ96AQ7 238 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-228ENST00000486227 PKMYT1Q99640 499 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 BRF2Q9HAW0 419 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 TMEM138Q9NPI0 162 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 SLC35C2Q9NQQ7 365 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 POLE3Q9NRF9 147 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 EIF3KQ9UBQ5 218 aaKnown RBP10.47□□□□□ -0.73
HDAC6-228ENST00000486227 SCDO00767 359 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 KHNYNO15037 678 aaKnown RBP10.47□□□□□ -0.73
HDAC6-228ENST00000486227 KIAA0513O60268 411 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 P2RY2P41231 377 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 NPRL3Q12980 569 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 TRAM2Q15035 370 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 OXA1LQ15070 435 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 NNATQ16517 81 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 RUNDC3AQ59EK9 446 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 Q6ZSR9 355 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 ZSWIM9Q86XI8 627 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 BBS10Q8TAM1 723 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 PHOSPHO1Q8TCT1 267 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 PIP5K1AQ99755 562 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 METTL7AQ9H8H3 244 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 PRTFDC1Q9NRG1 225 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 ERVK13-1Q9NX77 482 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 IL37Q9NZH6 218 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 MGAT4BQ9UQ53 548 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 SOBPA7XYQ1 873 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 ANHXE9PGG2 379 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 WWP2O00308 870 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 ARNTLO00327 626 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 OR7A17O14581 309 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 GPR37L1O60883 481 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 KHDRBS3O75525 346 aaKnown RBP10.47□□□□□ -0.73
HDAC6-228ENST00000486227 GADD45AP24522 165 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 TACR1P25103 407 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 CD6P30203 668 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 GABRA3P34903 492 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 EMX1Q04741 257 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-228ENST00000486227 KLHL24Q6TFL4 600 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 VRK3Q8IV63 474 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 MSANTD3Q96H12 275 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 TMEM19Q96HH6 336 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 ZSWIM3Q96MP5 696 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 MGLLQ99685 303 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 MARK1Q9P0L2 795 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 MED31Q9Y3C7 131 aa10.47□□□□□ -0.73
HDAC6-228ENST00000486227 A6NCN8 305 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 CXCR1P25024 350 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 RGNQ15493 299 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 TMEM44Q2T9K0 475 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 LRRC25Q8N386 305 aaPredicted RBP10.46□□□□□ -0.73
HDAC6-228ENST00000486227 LILRA3Q8N6C8 439 aaPredicted RBP10.46□□□□□ -0.73
HDAC6-228ENST00000486227 C7orf57Q8NEG2 295 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 SETD6Q8TBK2 473 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 MOAP1Q96BY2 351 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 CD180Q99467 661 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 FEVQ99581 238 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 BEX2Q9BXY8 128 aa10.46□□□□□ -0.73
HDAC6-228ENST00000486227 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.46□□□□□ -0.73
HDAC6-228ENST00000486227 UBE2ZQ9H832 354 aaPredicted RBP10.46□□□□□ -0.73
HDAC6-228ENST00000486227 PELI2Q9HAT8 420 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms