RNA–Protein interactions for RNA: ENST00000485024.1

VPS8-223, Transcript of VPS8, CORVET complex subunit, human

TSL 2

Gene VPS8, Length 477 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS8-223	ENST00000485024	PRMT2	P55345	433 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	SLC26A5	P58743	744 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	ABCE1	P61221	599 aa	Known RBP	3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	HERV-K104	P63124	156 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	PDZK1IP1	Q13113	114 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	OR1C1	Q15619	314 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	SHROOM1	Q2M3G4	852 aa	Predicted RBP	3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	WLS	Q5T9L3	541 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	FAM159A	Q6UWV7	190 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	FAM43B	Q6ZT52	329 aa	Predicted RBP	3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	C1orf186	Q6ZWK4	172 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	ZNF771	Q7L3S4	317 aa	Predicted RBP	3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	ZER1	Q7Z7L7	766 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	SLC22A15	Q8IZD6	547 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	LRRC17	Q8N6Y2	441 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	TMEM178A	Q8NBL3	297 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	MRGPRD	Q8TDS7	321 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	DQX1	Q8TE96	717 aa	Known RBP	3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	TSGA13	Q96PP4	275 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	NODAL	Q96S42	347 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	GPA33	Q99795	319 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	AGPAT1	Q99943	283 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	FICD	Q9BVA6	458 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	FUNDC2	Q9BWH2	189 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	PAPOLG	Q9BWT3	736 aa	Known RBP	3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	ATP13A3	Q9H7F0	1226 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	ECT2	Q9H8V3	914 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	C3orf14	Q9HBI5	128 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	NDUFA13	Q9P0J0	144 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	LNPEP	Q9UIQ6	1025 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	POMT2	Q9UKY4	750 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	ENTPD4	Q9Y227	616 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	PPP2R2C	Q9Y2T4	447 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	WIPI2	Q9Y4P8	454 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	DDX49	Q9Y6V7	483 aa	Known RBP	3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	ZHX2	Q9Y6X8	837 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	COL4A6	Q14031	1691 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	AKAP12	Q02952	1782 aa		3.38	□□□□□ -1.87
VPS8-223	ENST00000485024	NCAPD2	Q15021	1401 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	USP54	Q70EL1	1684 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	COL1A1	P02452	1464 aa	Predicted RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	IGKV3D-20	A0A0C4DH25	116 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	KPNA7	A9QM74	516 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	P2RX6	O15547	441 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	KIAA0513	O60268	411 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	ECE2	O60344	883 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	PEX11A	O75192	247 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	NADK	O95544	446 aa	Predicted RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	TXNDC12	O95881	172 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	LYN	P07948	512 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	PRSS56	P0CW18	603 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	CCL5	P13501	91 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	B4GALT1	P15291	398 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	GNS	P15586	552 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	CEBPB	P17676	345 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	TNNI3	P19429	210 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	RPA1	P27694	616 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	RPL9	P32969	192 aa	Known RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	CDKN1A	P38936	164 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	PRPH	P41219	470 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	ACADSB	P45954	432 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	SLC6A8	P48029	635 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	MTTP	P55157	894 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	PAX9	P55771	341 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	MYBPC1	Q00872	1141 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	GCKR	Q14397	625 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	PDIA5	Q14554	519 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	KARS	Q15046	597 aa	Known RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	C3AR1	Q16581	482 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	EPC2	Q52LR7	807 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	GPAT3	Q53EU6	434 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	STPG1	Q5TH74	334 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	CAPN13	Q6MZZ7	669 aa	Predicted RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024		Q6ZVQ6	151 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	HOGA1	Q86XE5	327 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	LACC1	Q8IV20	430 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	DCUN1D3	Q8IWE4	304 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	ZC3H3	Q8IXZ2	948 aa	Known RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	OR4L1	Q8NH43	312 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	FCGR1B	Q92637	280 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	MRPL38	Q96DV4	380 aa	Known RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	NECTIN4	Q96NY8	510 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	NEDD4L	Q96PU5	975 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	TAAR6	Q96RI8	345 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	KRT12	Q99456	494 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	ASCL2	Q99929	193 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	CBWD1	Q9BRT8	395 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	UPF3B	Q9BZI7	483 aa	Known RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	HOXD1	Q9GZZ0	328 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	DPEP3	Q9H4B8	488 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	RIBC2	Q9H4K1	309 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	CLMP	Q9H6B4	373 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	RPAP3	Q9H6T3	665 aa	Predicted RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	COG4	Q9H9E3	785 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	LIN28A	Q9H9Z2	209 aa	Known RBP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	SLC52A3	Q9NQ40	469 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	MED17	Q9NVC6	651 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	SOHLH2	Q9NX45	425 aa		3.37	□□□□□ -1.87
VPS8-223	ENST00000485024	CNOT2	Q9NZN8	540 aa	Known RBP	3.37	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms