RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	RPS6KA2	Q15349	733 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	LTB4R	Q15722	352 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	RNFT1	Q5M7Z0	435 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	RPTN	Q6XPR3	784 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	TMEM64	Q6YI46	380 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	SZRD1	Q7Z422	152 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	TRABD2A	Q86V40	505 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	SIAH3	Q8IW03	269 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	FAM9C	Q8IZT9	166 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	FAM109A	Q8N4B1	249 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	ZFP62	Q8NB50	900 aa	Predicted RBP	10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	OR10G3	Q8NGC4	313 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	OR52R1	Q8NGF1	315 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	C16orf52	Q8NHV5	167 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	AEN	Q8WTP8	325 aa	Known RBP	10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	CAVIN3	Q969G5	261 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	ZNF597	Q96LX8	424 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	PARD6B	Q9BYG5	372 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	METTL7A	Q9H8H3	244 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	IL1RL2	Q9HB29	575 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	DEPP	Q9NTK1	212 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	ALKBH4	Q9NXW9	302 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	TUBA8	Q9NY65	449 aa	Predicted RBP	10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	COQ3	Q9NZJ6	369 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	PLLP	Q9Y342	182 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	NPFFR2	Q9Y5X5	522 aa		10.63	□□□□□ -0.71
CPNE1-222	ENST00000473373	CRYBG3	Q68DQ2	2970 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	PINLYP	A6NC86	204 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	UBFD1	O14562	309 aa	Known RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	TRAPPC6A	O75865	159 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	BCAS2	O75934	225 aa	Predicted RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	RSL1D1	O76021	490 aa	Known RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	WISP2	O76076	250 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	ATP1B1	P05026	303 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	GDF1	P27539	372 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	ALDH3A1	P30838	453 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	MAN2A2	P49641	1150 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	NCBP2	P52298	156 aa	Known RBP eCLIP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	FBXW4	P57775	412 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	MRPS35	P82673	323 aa	Known RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	FUT7	Q11130	342 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	ZNF155	Q12901	538 aa	Predicted RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	SLC10A1	Q14973	349 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	PRICKLE4	Q2TBC4	344 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	GALNTL6	Q49A17	601 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	CMPK2	Q5EBM0	449 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	TBCEL	Q5QJ74	424 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	SH2D4B	Q5SQS7	431 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	PACS2	Q86VP3	889 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	HOMEZ	Q8IX15	550 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	FBXW8	Q8N3Y1	598 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	ZNF808	Q8N4W9	903 aa	Predicted RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	BANP	Q8N9N5	519 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	OR9A2	Q8NGT5	310 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	TCP10L	Q8TDR4	215 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	KAT2A	Q92830	837 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	TP53INP1	Q96A56	240 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	CNRIP1	Q96F85	164 aa	Predicted RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	TRMO	Q9BU70	441 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	MECR	Q9BV79	373 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	GATA5	Q9BWX5	397 aa	Predicted RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	RUBCNL	Q9H714	662 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	LRTM1	Q9HBL6	345 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	SLC35C2	Q9NQQ7	365 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	RYDEN	Q9NUL5	291 aa	Known RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	MAT2B	Q9NZL9	334 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	KLRF1	Q9NZS2	232 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	SLC17A7	Q9P2U7	560 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	HEY2	Q9UBP5	337 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	ACAD8	Q9UKU7	415 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	OR10H1	Q9Y4A9	318 aa		10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	NCOA6	Q14686	2063 aa	Predicted RBP	10.62	□□□□□ -0.71
CPNE1-222	ENST00000473373	ZNF354A	O60765	605 aa	Predicted RBP	10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	NADK	O95544	446 aa	Predicted RBP	10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	JUN	P05412	331 aa	Known RBP	10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	FBXO45	P0C2W1	286 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	LINC00032	P0C843	101 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	PCSK2	P16519	638 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	GPX3	P22352	226 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	IL12B	P29460	328 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	GPC1	P35052	558 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	RPL38	P63173	70 aa	Known RBP	10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	RAE1	P78406	368 aa	Known RBP	10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	MAP4K2	Q12851	820 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	NTRK2	Q16620	822 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	ZNF791	Q3KP31	576 aa	Predicted RBP	10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	TRMT12	Q53H54	448 aa	Known RBP	10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	WLS	Q5T9L3	541 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	TMEM211	Q6ICI0	200 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	ZNF585A	Q6P3V2	769 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	XKRX	Q6PP77	449 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	ZCCHC23	Q6ZST2	131 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	SH2D5	Q6ZV89	423 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	TICAM1	Q8IUC6	712 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	TMEM251	Q8N6I4	163 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	OR5M9	Q8NGP3	310 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	OR10Q1	Q8NGQ4	319 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	FAM57A	Q8TBR7	257 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	PAQR8	Q8TEZ7	354 aa		10.61	□□□□□ -0.71
CPNE1-222	ENST00000473373	CA5BP1	Q8WTZ4	195 aa		10.61	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 65 ms