RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SP5Q6BEB4 398 aaPredicted RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 QSOX2Q6ZRP7 698 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 THOC6Q86W42 341 aaKnown RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 TMEM178AQ8NBL3 297 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 FAM98AQ8NCA5 519 aaKnown RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 MDS2Q8NDY4 140 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 ELP5Q8TE02 316 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 UTP15Q8TED0 518 aaKnown RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 TSLPQ969D9 159 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 CFAP36Q96G28 342 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 SCMH1Q96GD3 660 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 MARS2Q96GW9 593 aaKnown RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 ZNF764Q96H86 408 aaPredicted RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 SMIM10Q96HG1 83 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 SIGLEC12Q96PQ1 595 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 NPAS2Q99743 824 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 AIF1LQ9BQI0 150 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 WDR83Q9BRX9 315 aaKnown RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 UNKQ9C0B0 810 aaKnown RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 SPNS1Q9H2V7 528 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 GSTO2Q9H4Y5 243 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 PELI2Q9HAT8 420 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 TRMT1Q9NXH9 659 aaKnown RBP6.77□□□□□ -1.33
USP54-208ENST00000461520 SLC17A6Q9P2U8 582 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 CHMP2BQ9UQN3 213 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 SLC22A14Q9Y267 594 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 KCNE2Q9Y6J6 123 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 CSMD2Q7Z408 3487 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 CPAMD8Q8IZJ3 1885 aa6.77□□□□□ -1.33
USP54-208ENST00000461520 SETD2Q9BYW2 2564 aaPredicted RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 CNTRLQ7Z7A1 2325 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 GABRR3A8MPY1 467 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 E7ESA3 106 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 PSMD12O00232 456 aaPredicted RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 CDC7O00311 574 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 CCL21O00585 134 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 NDC80O14777 642 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 SLC19A2O60779 497 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 DNAJB6O75190 326 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 KRT38O76015 456 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 NEURL1O76050 574 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 SEC31AO94979 1220 aaKnown RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 SP1P08047 785 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 SERPINA6P08185 405 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 RNH1P13489 461 aaKnown RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 GNAZP19086 355 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 GSTM2P28161 218 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 PGGT1BP53609 377 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 ITGA8P53708 1063 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 STXBP1P61764 594 aaKnown RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 OLR1P78380 273 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 PMP22Q01453 160 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 OC90Q02509 493 aaPredicted RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 SPINK14Q6IE38 97 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 SLC25A25Q6KCM7 469 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 TMPRSS11BQ86T26 416 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 ADAMTSL2Q86TH1 951 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 ZC3HC1Q86WB0 502 aaKnown RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 RPS19BP1Q86WX3 136 aaKnown RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 KLHL7Q8IXQ5 586 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 SIMC1Q8NDZ2 872 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 FBXO36Q8NEA4 188 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 TTLQ8NG68 377 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 CREB3L4Q8TEY5 395 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 ITLN2Q8WWU7 325 aaPredicted RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 VPS39Q96JC1 886 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 GPR137Q96N19 417 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 TSNARE1Q96NA8 513 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 EGFL8Q99944 293 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 CDCP1Q9H5V8 836 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 TRIM45Q9H8W5 580 aaPredicted RBP6.76□□□□□ -1.33
USP54-208ENST00000461520 POPDC3Q9HBV1 291 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 GALNT9Q9HCQ5 603 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 CHST11Q9NPF2 352 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 KLHL1Q9NR64 748 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 ANKRD10Q9NXR5 420 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 NSMCE4AQ9NXX6 385 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 LRFN1Q9P244 771 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 IKZF3Q9UKT9 509 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 ZNF835Q9Y2P0 537 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 OARD1Q9Y530 152 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 PSAT1Q9Y617 370 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 SAR1BQ9Y6B6 198 aa6.76□□□□□ -1.33
USP54-208ENST00000461520 PDZD2O15018 2839 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 IGKV3D-11A0A0A0MRZ8 115 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 SYNDIG1LA6NDD5 238 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 SAGE2PA6NJ88 616 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 FAM171A2A8MVW0 826 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 EFCAB8A8MWE9 144 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 FCHO1O14526 889 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 TP73O15350 636 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 B4GALT2O60909 372 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 C1GALT1C1LP0DN25 315 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 DDCP20711 480 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 AGAP20933 346 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 SAT1P21673 171 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 HPDP32754 393 aaPredicted RBP6.75□□□□□ -1.33
USP54-208ENST00000461520 HNF4AP41235 474 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 PAFAH1B1P43034 410 aa6.75□□□□□ -1.33
USP54-208ENST00000461520 SLC6A12P48065 614 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms