RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TBL1XO60907 577 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 H1F0P07305 194 aaKnown RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ANXA3P12429 323 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 PPIBP23284 216 aaKnown RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 IL32P24001 234 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 MMP11P24347 488 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 DNASE1P24855 282 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 VIPR1P32241 457 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 PURAQ00577 322 aaKnown RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 PUDPQ08623 228 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ADAM15Q13444 863 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 GRB14Q14449 540 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 PODNL1Q6PEZ8 512 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TMEM107Q6UX40 140 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 RTL4Q6ZR62 310 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 LRRTM4Q86VH4 590 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 ZNF687Q8N1G0 1237 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 SAMD12Q8N8I0 201 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 RAET1EQ8TD07 263 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 CXorf58Q96LI9 332 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 CLEC4MQ9H2X3 399 aaPredicted RBP11.08□□□□□ -0.64
CPSF3-202ENST00000460593 UBQLN2Q9UHD9 624 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 SPATA2Q9UM82 520 aa11.08□□□□□ -0.64
CPSF3-202ENST00000460593 TRBV5-4A0A0C4DH59 114 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 RNASET2O00584 256 aaKnown RBP11.07□□□□□ -0.64
CPSF3-202ENST00000460593 TPPPO94811 219 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 ACSM4P0C7M7 580 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 RPL17P18621 184 aaKnown RBP11.07□□□□□ -0.64
CPSF3-202ENST00000460593 TIA1P31483 386 aaKnown RBP eCLIP11.07□□□□□ -0.642e-7■■■■□ 25.8
CPSF3-202ENST00000460593 ATP5C1P36542 298 aaKnown RBP11.07□□□□□ -0.64
CPSF3-202ENST00000460593 NSG1P42857 185 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 SELENOPP49908 381 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 PCBP3P57721 371 aaKnown RBP11.07□□□□□ -0.64
CPSF3-202ENST00000460593 DSTNP60981 165 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 RING1Q06587 406 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 ANGPT1Q15389 498 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 ST3GAL2Q16842 350 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 KLHL12Q53G59 568 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 TRIM40Q6P9F5 258 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 LYPD4Q6UWN0 246 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 COMMD6Q7Z4G1 85 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 MRPL10Q7Z7H8 261 aaKnown RBP11.07□□□□□ -0.64
CPSF3-202ENST00000460593 ZER1Q7Z7L7 766 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 C2orf73Q8N5S3 287 aaPredicted RBP11.07□□□□□ -0.64
CPSF3-202ENST00000460593 SLC38A5Q8WUX1 472 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 SMG7Q92540 1137 aaKnown RBP11.07□□□□□ -0.64
CPSF3-202ENST00000460593 PPCDCQ96CD2 204 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 ASIC4Q96FT7 647 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 TMEM19Q96HH6 336 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 ABHD1Q96SE0 405 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 GPR62Q9BZJ7 368 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 AP5M1Q9H0R1 490 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 CXorf36Q9H7Y0 433 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 ZSCAN32Q9NX65 697 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 ANGPT4Q9Y264 503 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 A0A0U1RQF3 1178 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 ARHGEF33A8MVX0 844 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 COCHO43405 550 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 KLK1P06870 262 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 RRASP10301 218 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 SLC6A11P48066 632 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 COX10Q12887 443 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 TPGS1Q6ZTW0 290 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 KLBQ86Z14 1044 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 FTMTQ8N4E7 242 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 HMGB4Q8WW32 186 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 SCAMP4Q969E2 229 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 RFT1Q96AA3 541 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 REEP4Q9H6H4 257 aa11.07□□□□□ -0.64
CPSF3-202ENST00000460593 A0A1B0GVM2 712 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 A0A1W2PPL8 197 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 A0A1W2PRB8 838 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 MTMR11A4FU01 709 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 C5orf58C9J3I9 102 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 SGK494L7N484 410 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 TOR1AO14656 332 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 SSNA1O43805 119 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 STC2O76061 302 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 MT-ND4P03905 459 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ARAFP10398 606 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 NAT2P11245 290 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 GABRA5P31644 462 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 GIPRP48546 466 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ATP12AP54707 1039 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 CDKN3Q16667 212 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 PLEKHH3Q7Z736 793 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 LUZP2Q86TE4 346 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ADGRF3Q8IZF5 1079 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 GPC2Q8N158 579 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ZNF740Q8NDX6 193 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 BBS1Q8NFJ9 593 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 OR6M1Q8NGM8 313 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 OR2T35Q8NGX2 323 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 NEIL2Q969S2 332 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 MARVELD3Q96A59 401 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 ZFP3Q96NJ6 502 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 NLNQ9BYT8 704 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 BRD9Q9H8M2 597 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 FOLH1BQ9HBA9 442 aa11.06□□□□□ -0.64
CPSF3-202ENST00000460593 FLVCR2Q9UPI3 526 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms