RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 RDH16O75452 317 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 DNAJB5O75953 348 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 CHRM4P08173 479 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 HOXC5Q00444 222 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 CHRNEQ04844 493 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 LSAMPQ13449 338 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 MAD2L1BPQ15013 274 aaPredicted RBP12.85□□□□□ -0.35
CLK3-203ENST00000454830 MLIPQ5VWP3 458 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 FAHD1Q6P587 224 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 TSPYL5Q86VY4 417 aaPredicted RBP12.85□□□□□ -0.35
CLK3-203ENST00000454830 LACC1Q8IV20 430 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 SIMC1Q8NDZ2 872 aa12.85□□□□□ -0.35
CLK3-203ENST00000454830 PRAMEF27A3QJZ7 478 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 OR10H2O60403 315 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 INMTO95050 263 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 ALDH6A1Q02252 535 aaKnown RBP12.84□□□□□ -0.35
CLK3-203ENST00000454830 KEAP1Q14145 624 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 GPR68Q15743 365 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 BORAQ6PGQ7 559 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 FAM111BQ6SJ93 734 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 ZNF354BQ96LW1 612 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 IL4I1Q96RQ9 567 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 WFDC6Q9BQY6 131 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 TMEM74BQ9NUR3 256 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 DAPP1Q9UN19 280 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 UNC13CQ8NB66 2214 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 ASXL3Q9C0F0 2248 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 RGS10O43665 173 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 PCDHGA12O60330 932 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 FOXD2O60548 495 aaPredicted RBP12.84□□□□□ -0.35
CLK3-203ENST00000454830 GASTP01350 101 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 ALPPP05187 535 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 FRKP42685 505 aaPredicted RBP12.84□□□□□ -0.35
CLK3-203ENST00000454830 KCNJ5P48544 419 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 UGT2B15P54855 530 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 TAS2R41P59536 307 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 CCNJQ5T5M9 372 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 Q7L0L9 218 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 SLC16A11Q8NCK7 471 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 OR7G2Q8NG99 324 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 OR9A4Q8NGU2 314 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 BAHD1Q8TBE0 780 aaPredicted RBP12.84□□□□□ -0.35
CLK3-203ENST00000454830 ANKHQ9HCJ1 492 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.84□□□□□ -0.35
CLK3-203ENST00000454830 GMEB1Q9Y692 573 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 OR5K3A6NET4 321 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 TMX2-CTNND1H3BSU7 103 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 MT-ND2P03891 347 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 KRT20P35900 424 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 ELOAQ14241 798 aaKnown RBP12.84□□□□□ -0.35
CLK3-203ENST00000454830 ELOCQ15369 112 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 TCTN3Q6NUS6 607 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 VRK2Q86Y07 508 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 FAM60AQ9NP50 221 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 HCN3Q9P1Z3 774 aa12.84□□□□□ -0.35
CLK3-203ENST00000454830 IFNA8P32881 189 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 CSNK1EP49674 416 aaKnown RBP12.83□□□□□ -0.35
CLK3-203ENST00000454830 CDC42P60953 191 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 BBS10Q8TAM1 723 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 NCSTNQ92542 709 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 CDS1Q92903 461 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 ZG16BQ96DA0 208 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 MSANTD3Q96H12 275 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 TGM7Q96PF1 710 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 TRIM45Q9H8W5 580 aaPredicted RBP12.83□□□□□ -0.35
CLK3-203ENST00000454830 PAK1IP1Q9NWT1 392 aaPredicted RBP12.83□□□□□ -0.35
CLK3-203ENST00000454830 KLHL28Q9NXS3 571 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 NDRG4Q9ULP0 352 aaKnown RBP12.83□□□□□ -0.35
CLK3-203ENST00000454830 RNF6Q9Y252 685 aa12.83□□□□□ -0.35
CLK3-203ENST00000454830 A0A0A6YYC8 382 aaPredicted RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 CPSF4LA6NMK7 179 aaKnown RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 I3L1I5 382 aaPredicted RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 HCRTR1O43613 425 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 CCDC159P0C7I6 412 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 PORP16435 677 aaPredicted RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 CD247P20963 164 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 TSFMP43897 325 aaKnown RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 RPS6KA3P51812 740 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 SLC13A2Q13183 592 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 TRMT12Q53H54 448 aaKnown RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 CWF19L1Q69YN2 538 aaKnown RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 PTCHD4Q6ZW05 846 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 STX19Q8N4C7 294 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 OR4D11Q8NGI4 311 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 COPS4Q9BT78 406 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 GIN1Q9NXP7 522 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 CES1P1Q9UKY3 287 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 ZSCAN9O15535 394 aaPredicted RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 RGS8P57771 180 aaPredicted RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 FAM214AQ32MH5 1076 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 KLHL35Q6PF15 583 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 ENTHD1Q8IYW4 607 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 OR6T1Q8NGN1 323 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 MAP3K3Q99759 626 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 SARGQ9BW04 601 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 ACTRT3Q9BYD9 372 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 POLR2J3Q9H1A7 115 aaKnown RBP12.83□□□□□ -0.36
CLK3-203ENST00000454830 MS4A12Q9NXJ0 267 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 PCDHGA6Q9Y5G7 932 aa12.83□□□□□ -0.36
CLK3-203ENST00000454830 FCMRO60667 390 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms