RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 ALG10BQ5I7T1 473 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 ATAD3CQ5T2N8 411 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 PLBD1Q6P4A8 553 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 ZER1Q7Z7L7 766 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 PRR22Q8IZ63 422 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 HS3ST5Q8IZT8 346 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 CENPSQ8N2Z9 138 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 OR6Q1Q8NGQ2 317 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 FEVQ99581 238 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 FN3KQ9H479 309 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 FAM118AQ9NWS6 357 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 PAK1IP1Q9NWT1 392 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-209ENST00000438120 ABCG2Q9UNQ0 655 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 DNMT3AQ9Y6K1 912 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-209ENST00000438120 IGKV6D-21A0A0A0MT36 114 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 hCG_1807616A0A1W2PRN6 198 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 ZSCAN1Q8NBB4 408 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 ABHD5Q8WTS1 349 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 RADILQ96JH8 1075 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 ANKMY1Q9P2S6 941 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 KIAA0513O60268 411 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 RORAP35398 523 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 HNRNPKP61978 463 aaKnown RBP eCLIP16.35■□□□□ 0.212e-6■■■□□ 15.3
PTPRF-209ENST00000438120 SIX1Q15475 284 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-209ENST00000438120 BTBD16Q32M84 506 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 TMEM35AQ53FP2 167 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 SHISA6Q6ZSJ9 500 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 CD300LFQ8TDQ1 290 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 NEDD4LQ96PU5 975 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 SORBS1Q9BX66 1292 aaKnown RBP16.35■□□□□ 0.21
PTPRF-209ENST00000438120 KCNK13Q9HB14 408 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 MYEF2Q9P2K5 600 aaKnown RBP16.35■□□□□ 0.21
PTPRF-209ENST00000438120 VSTM2BA6NLU5 285 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 RBBP9O75884 186 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 PROZP22891 400 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 GBX1Q14549 363 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 TAS1R1Q7RTX1 841 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 DNAAF1Q8NEP3 725 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 MGLLQ99685 303 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 GXYLT2A0PJZ3 443 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 TOXO94900 526 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 S100A2P29034 98 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 FASLGP48023 281 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 DLX2Q07687 328 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-209ENST00000438120 APOFQ13790 326 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 ELOAQ14241 798 aaKnown RBP16.35■□□□□ 0.21
PTPRF-209ENST00000438120 GRIN2CQ14957 1233 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 DEFB133Q30KQ1 61 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 NRMQ8IXM6 262 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 NETO1Q8TDF5 533 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 PTERQ96BW5 349 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 NELL2Q99435 816 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 DLG5Q8TDM6 1919 aa16.35■□□□□ 0.21
PTPRF-209ENST00000438120 DPP6P42658 865 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 RPS15P62841 145 aaKnown RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 PLXDC1Q8IUK5 500 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 MINDY1Q8N5J2 469 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 COQ8AQ8NI60 647 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 ISPDA4D126 451 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 CEBPBP17676 345 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 C6orf183Q5T699 404 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 LETMD1Q6P1Q0 360 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 RAB11FIP2Q7L804 512 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 IL26Q9NPH9 171 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 PCDHGA6Q9Y5G7 932 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 ZCWPW2A0A1B0GU75 182 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 FRKP42685 505 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 ZNF81P51508 661 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 EIF5AL1Q6IS14 154 aaKnown RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 ALDH16A1Q8IZ83 802 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 NAGSQ8N159 534 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 SLC45A3Q96JT2 553 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 TMEM121BQ9BXQ6 578 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 RETREG1Q9H6L5 497 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 WDR6Q9NNW5 1121 aaKnown RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 SORBS2O94875 1100 aaKnown RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 ATE1O95260 518 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 LATS1O95835 1130 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 ENDOVQ8N8Q3 282 aaKnown RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 OR8J1Q8NGP2 316 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 CWH43Q9H720 699 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 RDH8Q9NYR8 311 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 FAM208AQ9UK61 1670 aaKnown RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 CD3GP09693 182 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 FOXA1P55317 472 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 ZNF829Q3KNS6 432 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 Q8N402 240 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 FOXJ1Q92949 421 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 KCNN1Q92952 543 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 CNN2Q99439 309 aaKnown RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 PHOX2BQ99453 314 aa16.34■□□□□ 0.21
PTPRF-209ENST00000438120 TIMM8BQ9Y5J9 83 aaPredicted RBP16.34■□□□□ 0.21
PTPRF-209ENST00000438120 SIGLEC1Q9BZZ2 1709 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 A0A1B0GVC2 190 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 M0QZQ0 153 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 GNAO1P09471 354 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 PIGGQ5H8A4 983 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 EEF1A1P5Q5VTE0 462 aa16.33■□□□□ 0.21
PTPRF-209ENST00000438120 MEX3DQ86XN8 651 aaKnown RBP16.33■□□□□ 0.21
PTPRF-209ENST00000438120 TOR1AIP2Q8NFQ8 470 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms