RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 KIR3DP1A8MWS1 328 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 CCL21O00585 134 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 TP53I11O14683 189 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 CDC40O60508 579 aaKnown RBP eCLIP14□□□□□ -0.17
LIMS3-201ENST00000437679 BCAS2O75934 225 aaPredicted RBP14□□□□□ -0.17
LIMS3-201ENST00000437679 CBX7O95931 251 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 LINC00032P0C843 101 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 PCSK2P16519 638 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 MPIP34949 423 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 ETV4P43268 484 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 DNASE1L1P49184 302 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 TMED10P49755 219 aaKnown RBP14□□□□□ -0.17
LIMS3-201ENST00000437679 HSF1Q00613 529 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 KIAA0040Q15053 153 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 NTRK2Q16620 822 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 TRMT12Q53H54 448 aaKnown RBP14□□□□□ -0.17
LIMS3-201ENST00000437679 ZNF628Q5EBL2 1059 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 SH2D4BQ5SQS7 431 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 FAM71E1Q6IPT2 247 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 MTFR2Q6P444 385 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 PAOXQ6QHF9 649 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 LRIG3Q6UXM1 1119 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 EXOC3L1Q86VI1 746 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 TICAM1Q8IUC6 712 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 NUDCD3Q8IVD9 361 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 DDIASQ8IXT1 998 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 FAM9CQ8IZT9 166 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 FBXW8Q8N3Y1 598 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 OR10G3Q8NGC4 313 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 OR52R1Q8NGF1 315 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 OR5M3Q8NGP4 307 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 OR9A2Q8NGT5 310 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 AGR3Q8TD06 166 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 TWIST2Q8WVJ9 160 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 ERP27Q96DN0 273 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 TTTY12Q9BZ98 90 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 IL1RL2Q9HB29 575 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 SH2D2AQ9NP31 389 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 PLEKHB1Q9UF11 243 aaPredicted RBP14□□□□□ -0.17
LIMS3-201ENST00000437679 ZNF835Q9Y2P0 537 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 DNAJC15Q9Y5T4 150 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 NPFFR2Q9Y5X5 522 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 DNAJC13O75165 2243 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 ZNF407Q9C0G0 2248 aa14□□□□□ -0.17
LIMS3-201ENST00000437679 FAM166BA8MTA8 275 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 PRRG2O14669 202 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 TM9SF1O15321 606 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 ESRRAP11474 423 aaPredicted RBP13.99□□□□□ -0.17
LIMS3-201ENST00000437679 NTSP30990 170 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 PIGAP37287 484 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 SERPINB4P48594 390 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 DCAF7P61962 342 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 KCNJ2P63252 427 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 RPP38P78345 283 aaKnown RBP13.99□□□□□ -0.17
LIMS3-201ENST00000437679 MRPS35P82673 323 aaKnown RBP13.99□□□□□ -0.17
LIMS3-201ENST00000437679 RPS6KA2Q15349 733 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 CEBPEQ15744 281 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 C3AR1Q16581 482 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 CMPK2Q5EBM0 449 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 PRAMEF20Q5VT98 475 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 TMEM64Q6YI46 380 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 Q6ZPB1 254 aaPredicted RBP13.99□□□□□ -0.17
LIMS3-201ENST00000437679 Q6ZSR9 355 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 OR52N2Q8NGI0 321 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 OR2T11Q8NH01 316 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 PUM2Q8TB72 1066 aaKnown RBP eCLIP13.99□□□□□ -0.17
LIMS3-201ENST00000437679 KAT2AQ92830 837 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 LCORQ96JN0 433 aaPredicted RBP13.99□□□□□ -0.17
LIMS3-201ENST00000437679 ITPAQ9BY32 194 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 DEFB127Q9H1M4 99 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 TUBB1Q9H4B7 451 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 TUBA8Q9NY65 449 aaPredicted RBP13.99□□□□□ -0.17
LIMS3-201ENST00000437679 DTX4Q9Y2E6 619 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 TMED5Q9Y3A6 229 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 ACTL7BQ9Y614 415 aa13.99□□□□□ -0.17
LIMS3-201ENST00000437679 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.99□□□□□ -0.17
LIMS3-201ENST00000437679 A0A1B0GTH9 108 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 WDR91A4D1P6 747 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 TMEM233B4DJY2 109 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 PIP5K1BO14986 540 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 ACOX3O15254 700 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 ZG16O60844 167 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 PDE9AO76083 593 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 GLSO94925 669 aaPredicted RBP13.98□□□□□ -0.17
LIMS3-201ENST00000437679 ABCD3P28288 659 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 PTGS2P35354 604 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 NCBP2P52298 156 aaKnown RBP eCLIP13.98□□□□□ -0.17
LIMS3-201ENST00000437679 FBXW4P57775 412 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 RPL38P63173 70 aaKnown RBP13.98□□□□□ -0.17
LIMS3-201ENST00000437679 DUSP8Q13202 625 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 NNATQ16517 81 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 GALNTL6Q49A17 601 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 TBCELQ5QJ74 424 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 PRR22Q8IZ63 422 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 FAM109AQ8N4B1 249 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 DIO2Q92813 273 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 HSPBAP1Q96EW2 488 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 PGM2Q96G03 612 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 PKNOX2Q96KN3 472 aa13.98□□□□□ -0.17
LIMS3-201ENST00000437679 FCRL1Q96LA6 429 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms