RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 RBM45Q8IUH3 476 aaKnown RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 NR4A3Q92570 626 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 FKBP10Q96AY3 582 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 GAL3ST1Q99999 423 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 RANBP3Q9H6Z4 567 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 SPATA6Q9NWH7 488 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-206ENST00000405805 COMMD9Q9P000 198 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 SLC6A14Q9UN76 642 aa11.35□□□□□ -0.59
HMGB1-206ENST00000405805 HMX3A6NHT5 357 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ETHE1O95571 254 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 CLTBP09497 229 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF35P13682 527 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 JUNDP17535 347 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 NTSP30990 170 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 RGS8P57771 180 aaPredicted RBP11.34□□□□□ -0.59
HMGB1-206ENST00000405805 GRM7Q14831 915 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 MICAQ29983 383 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 FRMPD2BQ6IN97 320 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ARL9Q6T311 187 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 HSDL2Q6YN16 418 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 MTSS1LQ765P7 747 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 TRIM46Q7Z4K8 759 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 SERPINA11Q86U17 422 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 RAB42Q8N4Z0 105 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 OR10H4Q8NGA5 316 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF296Q8WUU4 475 aaPredicted RBP11.34□□□□□ -0.59
HMGB1-206ENST00000405805 TMEM80Q96HE8 168 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ZCCHC2Q9C0B9 1178 aaKnown RBP11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ANHXE9PGG2 379 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 HRGP04196 525 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 PCCBP05166 539 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 LCN1P31025 176 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 DUSP7Q16829 419 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF791Q3KP31 576 aaPredicted RBP11.34□□□□□ -0.59
HMGB1-206ENST00000405805 REEP3Q6NUK4 255 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 MACC1Q6ZN28 852 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 FAM129CQ86XR2 697 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ZNF433Q8N7K0 673 aaPredicted RBP11.34□□□□□ -0.59
HMGB1-206ENST00000405805 TNFAIP8L1Q8WVP5 186 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 TMEM19Q96HH6 336 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 PKMYT1Q99640 499 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 PSORS1C1Q9UIG5 152 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 HCN2Q9UL51 889 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 CKAP5Q14008 2032 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 LOC105369274A0A096LPK9 316 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 TRBV4-1A0A0J9YWV2 114 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 METTL15A6NJ78 407 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 CYP17A1P05093 508 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 LHCGRP22888 699 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 CHMP24386 653 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 TM4SF4P48230 202 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ATXN7L3Q14CW9 347 aaPredicted RBP11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ARHGAP15Q53QZ3 475 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 SPIN4Q56A73 249 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 CCDC116Q8IYX3 515 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 OR4N4Q8N0Y3 316 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 KCT2Q8NC54 265 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ATP6V1C2Q8NEY4 427 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 ASB11Q8WXH4 323 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 FBXW5Q969U6 566 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 COQ8BQ96D53 544 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 SLIRPQ9GZT3 109 aaKnown RBP11.34□□□□□ -0.59
HMGB1-206ENST00000405805 CMAHPQ9Y471 501 aa11.34□□□□□ -0.59
HMGB1-206ENST00000405805 SEC16AO15027 2179 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 PARP14Q460N5 1801 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF705EA8MWA4 302 aaPredicted RBP11.33□□□□□ -0.6
HMGB1-206ENST00000405805 NCR1O76036 304 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 RB1P06400 928 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 TYRP14679 529 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 NCBP2P52298 156 aaKnown RBP eCLIP11.33□□□□□ -0.6
HMGB1-206ENST00000405805 GRIN2CQ14957 1233 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 RAB12Q6IQ22 244 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 KCTD20Q7Z5Y7 419 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF683Q8IZ20 524 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 ARSGQ96EG1 525 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 C12orf66Q96MD2 445 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 RNF121Q9H920 327 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 TMEM184CQ9NVA4 438 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 INSL5Q9Y5Q6 135 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 OR14I1A6ND48 311 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 E9PI62 339 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 LAIR1Q6GTX8 287 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 SLC46A3Q7Z3Q1 461 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 Q8N402 240 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 OR2T35Q8NGX2 323 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 CLSTN3Q9BQT9 956 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 ELAC1Q9H777 363 aaKnown RBP11.33□□□□□ -0.6
HMGB1-206ENST00000405805 SLC52A3Q9NQ40 469 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 NDRG4Q9ULP0 352 aaKnown RBP11.33□□□□□ -0.6
HMGB1-206ENST00000405805 TRIM3O75382 744 aaPredicted RBP11.33□□□□□ -0.6
HMGB1-206ENST00000405805 OR5F1O95221 314 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 MRPL3P09001 348 aaKnown RBP11.33□□□□□ -0.6
HMGB1-206ENST00000405805 SAGP10523 405 aaPredicted RBP11.33□□□□□ -0.6
HMGB1-206ENST00000405805 MAT2AP31153 395 aaKnown RBP11.33□□□□□ -0.6
HMGB1-206ENST00000405805 ZFP36L2P47974 494 aaKnown RBP11.33□□□□□ -0.6
HMGB1-206ENST00000405805 CSRP3P50461 194 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 PRMT2P55345 433 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF33BQ06732 778 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 SLC3A1Q07837 685 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 POU4F2Q12837 409 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms