RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NAA50Q9GZZ1 169 aaKnown RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 WRAP73Q9P2S5 460 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 ACPPP15309 386 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 NDUFV2P19404 249 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 DECR1Q16698 335 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 GDPD4Q6W3E5 623 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF611Q8N823 705 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 HMGB4Q8WW32 186 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 UTP4Q969X6 686 aaKnown RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 SIAEQ9HAT2 523 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 RDH14Q9HBH5 336 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 MCCC2Q9HCC0 563 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 APMAPQ9HDC9 416 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 PLCXD1Q9NUJ7 323 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 A6NL46 340 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 RHPN2P1A8MT19 583 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 KRBOX1C9JBD0 128 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 E7ESA3 106 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 KNG1P01042 644 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 SERPINF1P36955 418 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 CLCNKAP51800 687 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 CAP1Q01518 475 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 RNF151Q2KHN1 245 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 VARS2Q5ST30 1063 aaKnown RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 GDPGP1Q6ZNW5 385 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 OR4D6Q8NGJ1 314 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 TSGA13Q96PP4 275 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 HMX1Q9NP08 348 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 BOLA1Q9Y3E2 137 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 PRSS3P35030 304 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 LRIT3Q3SXY7 679 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 PLA2G15Q8NCC3 412 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 SLC22A18Q96BI1 424 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 RBP7Q96R05 134 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 RANBP9Q96S59 729 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 ARHGAP39Q9C0H5 1083 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 SLC6A5Q9Y345 797 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 AK6Q9Y3D8 172 aaKnown RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 GNB3P16520 340 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 PRKCAP17252 672 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 CAV2P51636 162 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 CLRN1P58418 232 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 ID2Q02363 134 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 KEAP1Q14145 624 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 ZC3H14Q6PJT7 736 aaKnown RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 PINK1Q9BXM7 581 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.32□□□□□ -0.6
SYNPO-202ENST00000394243 HS3ST4Q9Y661 456 aa11.32□□□□□ -0.6
SYNPO-202ENST00000394243 NAP1L6A6NFF2 107 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 MEIS3P2A8K0S8 358 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 MRPS14O60783 128 aaKnown RBP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 SF3B4Q15427 424 aaKnown RBP eCLIP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 C11orf91Q3C1V1 193 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ESCO2Q56NI9 601 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 FAM69AQ5T7M9 428 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 VITQ6UXI7 678 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF783Q6ZMS7 281 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 TMEM150AQ86TG1 271 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 OR9Q2Q8NGE9 314 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 OR5P2Q8WZ92 322 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 SLAMF9Q96A28 289 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 SGTBQ96EQ0 304 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 TLE6Q9H808 572 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 PLEKHA3Q9HB20 300 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 SULT1B1O43704 296 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 DCTP40126 519 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 RPS26P62854 115 aaKnown RBP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 NPY5RQ15761 445 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 AGAP7PQ5VUJ5 663 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 PLPP4Q5VZY2 271 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 GPR142Q7Z601 462 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 CAMKVQ8NCB2 501 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 BBS1Q8NFJ9 593 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 OR52E2Q8NGJ4 325 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 RHOXF1Q8NHV9 184 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 MAL2Q969L2 176 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 MEIS3P1A6NDR6 274 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 PDGFAP04085 211 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 RPS27AP62979 156 aaKnown RBP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 UBA52P62987 128 aaKnown RBP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 TLE3Q04726 772 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 TREML2Q5T2D2 321 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 NRARPQ7Z6K4 114 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 SERPINA12Q8IW75 414 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ALDH16A1Q8IZ83 802 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 LILRB2Q8N423 598 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 OR2AP1Q8NGE2 309 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 MEPEQ9NQ76 525 aaPredicted RBP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 NLE1Q9NVX2 485 aaPredicted RBP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 IL20RAQ9UHF4 553 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ATRNL1Q5VV63 1379 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 CNOT4O95628 575 aaKnown RBP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 RAB3DO95716 219 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 SCNN1AP37088 669 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 HSD11B2P80365 405 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 ZNF705AQ6ZN79 300 aaPredicted RBP11.31□□□□□ -0.6
SYNPO-202ENST00000394243 B3GNT7Q8NFL0 401 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 NPLOC4Q8TAT6 608 aa11.31□□□□□ -0.6
SYNPO-202ENST00000394243 C17orf62Q9BQA9 187 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms