RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 C12orf73Q69YU5 71 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF425Q6IV72 752 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 PAQR6Q6TCH4 344 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 VN1R4Q7Z5H5 301 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 SCARF2Q96GP6 870 aaPredicted RBP12.6□□□□□ -0.39
CCDC3-202ENST00000378839 NEURL2Q9BR09 285 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 MROQ9BYG7 248 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 P2RX2Q9UBL9 471 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 NDOR1Q9UHB4 597 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 SCN3AQ9NY46 2000 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 HTR3EA5X5Y0 456 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 DNTTP04053 509 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 DBTP11182 482 aaKnown RBP12.6□□□□□ -0.39
CCDC3-202ENST00000378839 MMP11P24347 488 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 UGT2B10P36537 528 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 BCAP31P51572 246 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 RPS3AP61247 264 aaKnown RBP12.6□□□□□ -0.39
CCDC3-202ENST00000378839 KRT33BQ14525 404 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 SLX4IPQ5VYV7 408 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 C19orf48Q6RUI8 117 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 NATD1Q8N6N6 113 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 IL17RCQ8NAC3 791 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 MORN4Q8NDC4 146 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 OR9A2Q8NGT5 310 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 OR1E3Q8WZA6 343 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF681Q96N22 645 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 CHCHD6Q9BRQ6 235 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF624Q9P2J8 865 aaPredicted RBP12.6□□□□□ -0.39
CCDC3-202ENST00000378839 LSM2Q9Y333 95 aaKnown RBP12.6□□□□□ -0.39
CCDC3-202ENST00000378839 TICRRQ7Z2Z1 1910 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3DA0A087WVF3 549 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3IA0A087WXS9 549 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3EA0A087X179 549 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3KA0A087X1G2 549 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3FA6NER0 549 aaPredicted RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 ISM1B1AKI9 464 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3LB9A6J9 549 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 BTN3A3O00478 584 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 PRKYO43930 277 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 CBFA2T3O75081 653 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3HP0C7X1 549 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 F3P13726 295 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 PORP16435 677 aaPredicted RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TGM1P22735 817 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 GRK3P35626 688 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 SOX18P35713 384 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 CLK1P49759 484 aaKnown RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TARDBPQ13148 414 aaKnown RBP eCLIP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TMEM35AQ53FP2 167 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3GQ6DHY5 549 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 PLAG1Q6DJT9 500 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3CQ6IPX1 549 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 ANKRD54Q6NXT1 300 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 KIF18BQ86Y91 864 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D3Q8IZP1 549 aaPredicted RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 FAM46DQ8NEK8 389 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 MCFD2Q8NI22 146 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 FLVCR1-AS1Q8TAF5 88 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 FGF11Q92914 225 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 ELSPBP1Q96BH3 223 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 DACH2Q96NX9 599 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 WDR12Q9GZL7 423 aaKnown RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 NKX2-4Q9H2Z4 354 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 EHD3Q9NZN3 535 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 NTNG1Q9Y2I2 539 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 FAAHO00519 579 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 ARHGAP33O14559 1287 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 PROM1O43490 865 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 EGFP01133 1207 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 MC3RP41968 323 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TSTQ16762 297 aaKnown RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 INAVAQ3KP66 663 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 OR2L5Q8NG80 312 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TRMT61AQ96FX7 289 aaKnown RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 OPALINQ96PE5 141 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 BBS4Q96RK4 519 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TAPBPLQ9BX59 468 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 PLA2G12AQ9BZM1 189 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 DAPK2Q9UIK4 370 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 MYO10Q9HD67 2058 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 PRSS38A1L453 326 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 KRBA1A5PL33 1030 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 OXSR1O95747 527 aaPredicted RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 LGI1O95970 557 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 TNNI3P19429 210 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 NKX2-5P52952 324 aaPredicted RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 MED22Q15528 200 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 FLYWCH1Q4VC44 716 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 ACSM5Q6NUN0 579 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 SLC48A1Q6P1K1 146 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 SFTPA2Q8IWL1 248 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 CYP4Z2PQ8N1L4 340 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 Q8N9G6 341 aaPredicted RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 DOK4Q8TEW6 326 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 KLHL6Q8WZ60 621 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 KAT2AQ92830 837 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF607Q96SK3 696 aa12.59□□□□□ -0.39
CCDC3-202ENST00000378839 NXF2Q9GZY0 626 aaKnown RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 POLR2J3Q9H1A7 115 aaKnown RBP12.59□□□□□ -0.39
CCDC3-202ENST00000378839 EQTNQ9NQ60 294 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms