RNA–Protein interactions for RNA: ENST00000375425.9

NELFE-201, Transcript of negative elongation factor complex member E, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NELFE, Length 1,405 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-201ENST00000375425 PACS2Q86VP3 889 aa13.05□□□□□ -0.32
NELFE-201ENST00000375425 C1orf52Q8N6N3 182 aaKnown RBP13.05□□□□□ -0.32
NELFE-201ENST00000375425 SIMC1Q8NDZ2 872 aa13.05□□□□□ -0.32
NELFE-201ENST00000375425 ADCY4Q8NFM4 1077 aa13.05□□□□□ -0.32
NELFE-201ENST00000375425 ZNF597Q96LX8 424 aa13.05□□□□□ -0.32
NELFE-201ENST00000375425 RILPQ96NA2 401 aa13.05□□□□□ -0.32
NELFE-201ENST00000375425 GNRHR2Q96P88 292 aa13.05□□□□□ -0.32
NELFE-201ENST00000375425 SECISBP2Q96T21 854 aaKnown RBP13.05□□□□□ -0.32
NELFE-201ENST00000375425 ANGPTL4Q9BY76 406 aa13.05□□□□□ -0.32
NELFE-201ENST00000375425 NXF5Q9H1B4 397 aaKnown RBP13.05□□□□□ -0.32
NELFE-201ENST00000375425 BCAP29Q9UHQ4 241 aa13.05□□□□□ -0.32
NELFE-201ENST00000375425 PCDHGB3Q9Y5G1 929 aa13.05□□□□□ -0.32
NELFE-201ENST00000375425 C15orf38-AP3S2A0A0A6YYH1 394 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 MANBAO00462 879 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 ULK1O75385 1050 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 KRT6AP02538 564 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 KRT6BP04259 564 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 ABCB1P08183 1280 aaPredicted RBP13.04□□□□□ -0.32
NELFE-201ENST00000375425 CSNK2A2P19784 350 aaPredicted RBP13.04□□□□□ -0.32
NELFE-201ENST00000375425 IMPDH1P20839 514 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 GPX3P22352 226 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 SOX18P35713 384 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 KRT6CP48668 564 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 ALDH9A1P49189 494 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 TRA2BP62995 288 aaKnown RBP13.04□□□□□ -0.32
NELFE-201ENST00000375425 RPP38P78345 283 aaKnown RBP13.04□□□□□ -0.32
NELFE-201ENST00000375425 EXOSC7Q15024 291 aaKnown RBP13.04□□□□□ -0.32
NELFE-201ENST00000375425 RASA2Q15283 850 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 FNDC7Q5VTL7 733 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 IFT20Q8IY31 132 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 ULK2Q8IYT8 1036 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 METTL6Q8TCB7 284 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 ZNF681Q96N22 645 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 TMEM237Q96Q45 408 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 FAIM2Q9BWQ8 316 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 UBQLN3Q9H347 655 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 MAT2BQ9NZL9 334 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 ZNF639Q9UID6 485 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 CFL2Q9Y281 166 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 ZNF780BQ9Y6R6 833 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 PHF3Q92576 2039 aaKnown RBP13.04□□□□□ -0.32
NELFE-201ENST00000375425 CCDC168Q8NDH2 2452 aa13.04□□□□□ -0.32
NELFE-201ENST00000375425 VPS13CQ709C8 3753 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 TEP1Q99973 2627 aaKnown RBP13.03□□□□□ -0.32
NELFE-201ENST00000375425 ZFHX3Q15911 3703 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 AHRRA9YTQ3 701 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 FAM47E-STBD1D6RA91 191 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 RIPK2O43353 540 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 HSD3B1P14060 373 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 CHN1P15882 459 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 KRT15P19012 456 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 ATP5F1P24539 256 aaPredicted RBP13.03□□□□□ -0.32
NELFE-201ENST00000375425 HSD3B2P26439 372 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 MASP1P48740 699 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 DUSP2Q05923 314 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 NNATQ16517 81 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 TRMT12Q53H54 448 aaKnown RBP13.03□□□□□ -0.32
NELFE-201ENST00000375425 RIPPLY2Q5TAB7 128 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 GPRIN3Q6ZVF9 776 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 SEM1Q6ZVN7 128 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 WDR53Q7Z5U6 358 aaPredicted RBP13.03□□□□□ -0.32
NELFE-201ENST00000375425 LCA5Q86VQ0 697 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 CCDC116Q8IYX3 515 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 CLYBLQ8N0X4 340 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 KIF18AQ8NI77 898 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 CTHRC1Q96CG8 243 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 KLHL29Q96CT2 875 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 CNRIP1Q96F85 164 aaPredicted RBP13.03□□□□□ -0.32
NELFE-201ENST00000375425 LCORQ96JN0 433 aaPredicted RBP13.03□□□□□ -0.32
NELFE-201ENST00000375425 TIMP4Q99727 224 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 ITPAQ9BY32 194 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 HEY2Q9UBP5 337 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 UTS2RQ9UKP6 389 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 PLLPQ9Y342 182 aa13.03□□□□□ -0.32
NELFE-201ENST00000375425 INTS1Q8N201 2190 aaKnown RBP13.02□□□□□ -0.32
NELFE-201ENST00000375425 GOLGA8RI6L899 631 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 KIF2AO00139 706 aaPredicted RBP13.02□□□□□ -0.33
NELFE-201ENST00000375425 PPM1BO75688 479 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 ESRRBO95718 433 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 CBX7O95931 251 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 HPNP05981 417 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 FAM153BP0C7A2 387 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 PCSK2P16519 638 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 NAGAP17050 411 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 CDK9P50750 372 aaKnown RBP13.02□□□□□ -0.33
NELFE-201ENST00000375425 PRKAA2P54646 552 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 DLX5P56178 289 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 MRPS35P82673 323 aaKnown RBP13.02□□□□□ -0.33
NELFE-201ENST00000375425 CRYZQ08257 329 aaKnown RBP13.02□□□□□ -0.33
NELFE-201ENST00000375425 CSTF3Q12996 717 aaKnown RBP13.02□□□□□ -0.33
NELFE-201ENST00000375425 SLC29A2Q14542 456 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 TOMM20Q15388 145 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 LTB4RQ15722 352 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 SLC25A35Q3KQZ1 300 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 FAM153CQ494X1 144 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 TIGD3Q6B0B8 471 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 DESI1Q6ICB0 168 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 SLC22A9Q8IVM8 553 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 CEP112Q8N8E3 955 aa13.02□□□□□ -0.33
NELFE-201ENST00000375425 OR52R1Q8NGF1 315 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms