RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 HMX3A6NHT5 357 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 SLITRK5O94991 958 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 MAOBP27338 520 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 HADHBP55084 474 aaKnown RBP12.04□□□□□ -0.48
SDC3-201ENST00000336798 ZNF829Q3KNS6 432 aaPredicted RBP12.04□□□□□ -0.48
SDC3-201ENST00000336798 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.04□□□□□ -0.48
SDC3-201ENST00000336798 LIPJQ5W064 366 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 PSAPL1Q6NUJ1 521 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 ARL14Q8N4G2 192 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 PELOQ9BRX2 385 aaKnown RBP12.04□□□□□ -0.48
SDC3-201ENST00000336798 OARD1Q9Y530 152 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 ABCB7O75027 752 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 THBS2P35442 1172 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 HES5Q5TA89 166 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 C6orf120Q7Z4R8 191 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 COMMD7Q86VX2 200 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 C3orf58Q8NDZ4 430 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 ACTL7AQ9Y615 435 aa12.04□□□□□ -0.48
SDC3-201ENST00000336798 A8MVJ9 347 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 KNG1P01042 644 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 C6P13671 934 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 PSPHP78330 225 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 PITX1P78337 314 aaPredicted RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 UPP1Q16831 310 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 PDSS2Q86YH6 399 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 ZNF296Q8WUU4 475 aaPredicted RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 MAL2Q969L2 176 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 MOAP1Q96BY2 351 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 SYNPO2LQ9H987 977 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 SFXN1Q9H9B4 322 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 KLHL9Q9P2J3 617 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 FETUBQ9UGM5 382 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 SLCO3A1Q9UIG8 710 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 PCDHGA2Q9Y5H1 932 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 ANKRD28O15084 1053 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 GPR143P51810 404 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 CDKN2DP55273 166 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 MVKQ03426 396 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 DEFB133Q30KQ1 61 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 IQCF1Q8N6M8 205 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 POC1BQ8TC44 478 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 ACAD8Q9UKU7 415 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 PCDH17O14917 1159 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 TIA1P31483 386 aaKnown RBP eCLIP12.03□□□□□ -0.483e-7■■□□□ 13.8
SDC3-201ENST00000336798 UGT2B10P36537 528 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 STT3AP46977 705 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 POLR2HP52434 150 aaKnown RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 LBX1P52954 281 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 KCNC3Q14003 757 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 GBX1Q14549 363 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 MOGQ16653 247 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 C6orf136Q5SQH8 315 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 TAS1R3Q7RTX0 852 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 Q8N402 240 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 MTMR14Q8NCE2 650 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 GCDHQ92947 438 aaPredicted RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 CPEB1Q9BZB8 566 aaKnown RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 C2orf42Q9NWW7 574 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 STSP08842 583 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 ITGB8P26012 769 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 NKPD1Q17RQ9 610 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 PLBD1Q6P4A8 553 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 LILRB2Q8N423 598 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 OR5B12Q96R08 314 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 TSNAXQ99598 290 aaKnown RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 PHB2Q99623 299 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 VDAC3Q9Y277 283 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 IGKV6D-41A0A0C4DH26 115 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 RAB19A4D1S5 217 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 ACOT7O00154 380 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 RGS9O75916 674 aaPredicted RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 RNH1P13489 461 aaKnown RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 NTRK2Q16620 822 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 DDIT4LQ96D03 193 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 FAM71F1Q96KD3 344 aaPredicted RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 FOXN4Q96NZ1 517 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 OR5B2Q96R09 309 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 NELL2Q99435 816 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 DOHHQ9BU89 302 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 DPCDQ9BVM2 203 aaPredicted RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 CDH20Q9HBT6 801 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 PAQR5Q9NXK6 330 aaPredicted RBP12.03□□□□□ -0.48
SDC3-201ENST00000336798 ERVK-19Q9WJR5 959 aa12.03□□□□□ -0.48
SDC3-201ENST00000336798 FBXO45P0C2W1 286 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 H2AFB2P0C5Z0 115 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 CD1DP15813 335 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 MSR1P21757 451 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 PTGER1P34995 402 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 KIAA0895LQ68EN5 471 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 TSPAN33Q86UF1 283 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 CLECL1Q8IZS7 167 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 TMIEQ8NEW7 156 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 SAT2Q96F10 170 aaPredicted RBP12.02□□□□□ -0.48
SDC3-201ENST00000336798 COQ4Q9Y3A0 265 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 LSM5Q9Y4Y9 91 aaKnown RBP12.02□□□□□ -0.48
SDC3-201ENST00000336798 FAAHO00519 579 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 GOSR2O14653 212 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 PPP1R3DO95685 299 aa12.02□□□□□ -0.48
SDC3-201ENST00000336798 ERCC1P07992 297 aaPredicted RBP12.02□□□□□ -0.48
SDC3-201ENST00000336798 KCNE1P15382 129 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms