RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SIM1P81133 766 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 TAF1AQ15573 450 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF141Q15928 474 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 HIST3H3Q16695 136 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 NKPD1Q17RQ9 610 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 TKFCQ3LXA3 575 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 ACTBL2Q562R1 376 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC35F1Q5T1Q4 408 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 TDRD10Q5VZ19 366 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 BTNL8Q6UX41 500 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 IFNL3Q8IZI9 196 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 OR4E2Q8NGC2 313 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 NDNFQ8TB73 568 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 LRTOMTQ8WZ04 291 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 LXNQ9BS40 222 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 NMES1Q9C002 83 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 C1orf198Q9H425 327 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 CALHM2Q9HA72 323 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 SPHK1Q9NYA1 384 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 PCYOX1Q9UHG3 505 aa7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 PIN4Q9Y237 131 aaKnown RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 ZFP37Q9Y6Q3 630 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-201ENST00000313860 USP17L12C9JPN9 530 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 USP17L21D6R901 530 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 CHL1O00533 1208 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 MAS1P04201 325 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 CXCR2P25025 360 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 GGT5P36269 586 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ATP5C1P36542 298 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ARR3P36575 388 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 RPL21P46778 160 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ACKR1Q16570 336 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 AMHR2Q16671 573 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM98CQ17RN3 349 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 BCL2L15Q5TBC7 163 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ANKRD22Q5VYY1 191 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SIGIRRQ6IA17 410 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 UBE3DQ7Z6J8 389 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 HSFY1Q96LI6 401 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 STACQ99469 402 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 KATNB1Q9BVA0 655 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SMPD3Q9NY59 655 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 OR6C3Q9NZP0 311 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 TROQ12816 1431 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF670-ZNF695F2Z2N8 137 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 HOXD8P13378 290 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 PROZP22891 400 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ADORA1P30542 326 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 OR10J1P30954 320 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SOX18P35713 384 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF90Q03938 601 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 Q6ZN92 141 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF571Q7Z3V5 609 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 C6orf201Q7Z4U5 140 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 LRRTM3Q86VH5 581 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 PRSS58Q8IYP2 241 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 HYLS1Q96M11 299 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 GSX1Q9H4S2 264 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 MCTS1Q9ULC4 181 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 PROSCO94903 275 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 RARAP10276 462 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 PTPN2P17706 415 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 CDK7P50613 346 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 TPMTP51580 245 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM132BQ14DG7 1078 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 GCNT6Q5T4J0 391 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 DOK3Q7L591 496 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 OTOP1Q7RTM1 612 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 LACC1Q8IV20 430 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 FRMD1Q8N878 549 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 LINC00301Q8NCQ3 95 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 PPTC7Q8NI37 304 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 UHRF1Q96T88 793 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ORAI3Q9BRQ5 295 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 OSBPL2Q9H1P3 480 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 CDC42EP4Q9H3Q1 356 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 BEX4Q9NWD9 120 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SMOXQ9NWM0 555 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 DDIT4Q9NX09 232 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 NUP153P49790 1475 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 URADA6NGE7 173 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC22A1O15245 554 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 CYB5BO43169 146 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SOCS5O75159 536 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 HTR1AP08908 422 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 NME2P22392 152 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 AVPR1BP47901 424 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC18A1P54219 525 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF816Q0VGE8 651 aaPredicted RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SSX1Q16384 188 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SEZ6L2Q6UXD5 910 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ERASQ7Z444 233 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 OR13C4Q8NGS5 318 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ZFYVE21Q9BQ24 234 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ARV1Q9H2C2 271 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 RIOX1Q9H6W3 641 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 LIN28AQ9H9Z2 209 aaKnown RBP7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 SAR1AQ9NR31 198 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 ADGRB2O60241 1585 aa7.31□□□□□ -1.24
LIMCH1-201ENST00000313860 KDM4EB2RXH2 506 aaPredicted RBP7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms