RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 UCHL1P09936 223 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CYP2A6P11509 494 aaPredicted RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 MTHFD2P13995 350 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SYN1P17600 705 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PCMT1P22061 227 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ITGB7P26010 798 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 MAT2AP31153 395 aaKnown RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 AQP2P41181 271 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 UFM1P61960 85 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 RIN1Q13671 783 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CPTPQ5TA50 214 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CNKSR3Q6P9H4 555 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CORO6Q6QEF8 472 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 FAM198BQ6UWH4 519 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PARGQ86W56 976 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 FAM58AQ8N1B3 248 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 BEST3Q8N1M1 668 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 L3MBTL4Q8NA19 623 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CD200R1Q8TD46 325 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CITED2Q99967 270 aaPredicted RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 SYT17Q9BSW7 474 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 BTBD1Q9H0C5 482 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PCDHB14Q9Y5E9 798 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 ZNF670-ZNF695F2Z2N8 137 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PPP1R2P9O14990 202 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 RHOCP08134 193 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 EDNRAP25101 427 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 MAP2K3P46734 347 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 GP2P55259 537 aaKnown RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 TLE3Q04726 772 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 GK2Q14410 553 aaPredicted RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 SLC25A30Q5SVS4 291 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PLEKHS1Q5SXH7 462 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 GPR153Q6NV75 609 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 PRICKLE2Q7Z3G6 844 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 MCEMP1Q8IX19 187 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 DNAJC22Q8N4W6 341 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 OR8J2Q8NGG1 315 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 AHCYL2Q96HN2 611 aaKnown RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 SUSD3Q96L08 255 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 SIGLEC11Q96RL6 698 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 CD244Q9BZW8 370 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 RBFOX1Q9NWB1 397 aaKnown RBP6.12□□□□□ -1.43
VPS35-201ENST00000299138 PCDHB11Q9Y5F2 797 aa6.12□□□□□ -1.43
VPS35-201ENST00000299138 TRBV5-3A0A0A0MS03 114 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SEC14L5O43304 696 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 LDB2O43679 373 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ENTPD6O75354 484 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 RPP14O95059 124 aaKnown RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 BCKDHAP12694 445 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 IL7RP16871 459 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 CCND3P30281 292 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 OXTRP30559 389 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 TLX1P31314 330 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 IGFALSP35858 605 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 HMGCLP35914 325 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ZNF140P52738 457 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 CDH12P55289 794 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 TMEM62Q0P6H9 643 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ZNF697Q5TEC3 545 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PLAG1Q6DJT9 500 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 MRPL10Q7Z7H8 261 aaKnown RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 IQCHQ86VS3 1027 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SAMD14Q8IZD0 417 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 BEND7Q8N7W2 519 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 OR2AJ1Q8NGZ0 328 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ARRDC2Q8TBH0 407 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ARL11Q969Q4 196 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 IFT27Q9BW83 186 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 MTG2Q9H4K7 406 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ANKRD19PQ9H560 264 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 INPP5EQ9NRR6 644 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SEC14L3Q9UDX4 400 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SRRDQ9UH36 339 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 AGO1Q9UL18 857 aaKnown RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 EEF1E1-BLOC1S5C9J1V9 151 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ADAM10O14672 748 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 LRRTM2O43300 516 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 EEF1E1O43324 174 aaKnown RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 ALPPP05187 535 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 RHCEP18577 417 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 LSSP48449 732 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PER3P56645 1201 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 RHOAP61586 193 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 POLR2LP62875 67 aaKnown RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 IRF8Q02556 426 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ADPRMQ3LIE5 342 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 OTUD1Q5VV17 481 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 METTL11BQ5VVY1 283 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PRAMEF8Q5VWM4 474 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PRAMEF7Q5VXH5 474 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PAQR3Q6TCH7 311 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 CAMKMTQ7Z624 323 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SERPINA12Q8IW75 414 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PLA2G15Q8NCC3 412 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 OR6K6Q8NGW6 343 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 MOAP1Q96BY2 351 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 TMEM80Q96HE8 168 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 FAM173AQ9BQD7 235 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 BRF2Q9HAW0 419 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms