RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 ASNA1O43681 348 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 ST6GAL1P15907 406 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 CDK5R2Q13319 367 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 LASP1Q14847 261 aaKnown RBP14.4□□□□□ -0.1
SF3B4-201ENST00000271628 MAPK11Q15759 364 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 SYPL1Q16563 259 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 ANKDD1AQ495B1 522 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 GPR153Q6NV75 609 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 FAHD1Q6P587 224 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 C16orf87Q6PH81 154 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 LINC00299Q6ZSB3 139 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 USP53Q70EK8 1073 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 ANKRD13BQ86YJ7 626 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 C19orf47Q8N9M1 422 aaKnown RBP14.4□□□□□ -0.1
SF3B4-201ENST00000271628 OR5D16Q8NGK9 328 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 C1orf216Q8TAB5 229 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 BBS10Q8TAM1 723 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 ZNF354BQ96LW1 612 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 CSF3RQ99062 836 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 PIP5K1AQ99755 562 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 FUNDC2Q9BWH2 189 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 BCL2L10Q9HD36 194 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 IRAK4Q9NWZ3 460 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 SEC14L3Q9UDX4 400 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 TESMINQ9Y4I5 508 aa14.4□□□□□ -0.1
SF3B4-201ENST00000271628 GPC6Q9Y625 555 aaPredicted RBP14.4□□□□□ -0.1
SF3B4-201ENST00000271628 LMO7DNF2Z398 122 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 BCKDKO14874 412 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 SRPX2O60687 465 aaPredicted RBP14.39□□□□□ -0.11
SF3B4-201ENST00000271628 ZBTB11O95625 1053 aaPredicted RBP14.39□□□□□ -0.11
SF3B4-201ENST00000271628 ALPPL2P10696 532 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 ANXA8P13928 327 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 TNFRSF1BP20333 461 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 PCMT1P22061 227 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 XCR1P46094 333 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 CAPZBP47756 277 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 KCNJ5P48544 419 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 HMGA2P52926 109 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 VSX2P58304 361 aaPredicted RBP14.39□□□□□ -0.11
SF3B4-201ENST00000271628 CXCR4P61073 352 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 PPP1CAP62136 330 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 SPIBQ01892 262 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 KEAP1Q14145 624 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 LAPTM4AQ15012 233 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 RPS26P11Q5JNZ5 115 aaPredicted RBP14.39□□□□□ -0.11
SF3B4-201ENST00000271628 PRAMEF8Q5VWM4 474 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 PRAMEF7Q5VXH5 474 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 C17orf82Q86X59 251 aaPredicted RBP14.39□□□□□ -0.11
SF3B4-201ENST00000271628 LGI4Q8N135 537 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 OR9A2Q8NGT5 310 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 DNASE2BQ8WZ79 361 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 SGCDQ92629 289 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 IER2Q9BTL4 223 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 BTBD2Q9BX70 525 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 NTMQ9P121 344 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 ENPP5Q9UJA9 477 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 CEP192Q8TEP8 1941 aa14.39□□□□□ -0.11
SF3B4-201ENST00000271628 A0A0G2JPF8 293 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 PRAMEF25A6NGN4 478 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 DUXAA6NLW8 204 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 HNRNPCL2B2RXH8 293 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 HNRNPCL3B7ZW38 293 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 GALR3O60755 368 aaPredicted RBP14.38□□□□□ -0.11
SF3B4-201ENST00000271628 PROS1P07225 676 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 HNRNPCL4P0DMR1 293 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 AGXTP21549 392 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 MC3RP41968 323 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 IL1RL1Q01638 556 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 WDR45BQ5MNZ6 344 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 NIPAL1Q6NVV3 410 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 OGFOD3Q6PK18 319 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 GALNT5Q7Z7M9 940 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 TCTN2Q96GX1 697 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 COL21A1Q96P44 957 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 LIPT1Q9Y234 373 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 ZNF99A8MXY4 864 aaPredicted RBP14.38□□□□□ -0.11
SF3B4-201ENST00000271628 PTGES3LE9PB15 166 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 SLITRK5O94991 958 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 AGR2O95994 175 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 PORP16435 677 aaPredicted RBP14.38□□□□□ -0.11
SF3B4-201ENST00000271628 MAPK10P53779 464 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 CDH12P55289 794 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 SNRPNP63162 240 aaKnown RBP14.38□□□□□ -0.11
SF3B4-201ENST00000271628 SKP1P63208 163 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 MICAQ29983 383 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 ZNF605Q86T29 641 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 TMEFF1Q8IYR6 380 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 TTC29Q8NA56 475 aaPredicted RBP14.38□□□□□ -0.11
SF3B4-201ENST00000271628 COL26A1Q96A83 441 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 DUSP15Q9H1R2 295 aaPredicted RBP14.38□□□□□ -0.11
SF3B4-201ENST00000271628 FAM60AQ9NP50 221 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 CALML5Q9NZT1 146 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 PTGFRNQ9P2B2 879 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 TPRKBQ9Y3C4 175 aa14.38□□□□□ -0.11
SF3B4-201ENST00000271628 A0A1W2PS29 197 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 PRAMEF27A3QJZ7 478 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 K7ESF4 209 aa14.37□□□□□ -0.11
SF3B4-201ENST00000271628 MITFO75030 526 aaPredicted RBP14.37□□□□□ -0.11
SF3B4-201ENST00000271628 BCAS1O75363 584 aaPredicted RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms