RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RFX3P48380 749 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 GIPRP48546 466 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 SNRPD2P62316 118 aaKnown RBP11.96□□□□□ -0.49
LIG1-201ENST00000263274 ILKQ13418 452 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 RNASE12Q5GAN4 147 aaKnown RBP11.96□□□□□ -0.49
LIG1-201ENST00000263274 ABI3BPQ7Z7G0 1075 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 ZER1Q7Z7L7 766 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 AMZ2Q86W34 360 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 ADGRF3Q8IZF5 1079 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 CRIPAKQ8N1N5 446 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 CADM2Q8N3J6 435 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 OR6T1Q8NGN1 323 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 PXYLP1Q8TE99 480 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 TM4SF18Q96CE8 201 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 ZSWIM3Q96MP5 696 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 NXF2Q9GZY0 626 aaKnown RBP11.96□□□□□ -0.49
LIG1-201ENST00000263274 HDHD2Q9H0R4 259 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 H2AFY2Q9P0M6 372 aaPredicted RBP11.96□□□□□ -0.49
LIG1-201ENST00000263274 ANAPC1Q9H1A4 1944 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 ANTXRLA6NF34 631 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 CAPN5O15484 640 aaPredicted RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 RHOP08100 348 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 SRPRAP08240 638 aaKnown RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 IRS1P35568 1242 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 MAN2A2P49641 1150 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 PCBP3P57721 371 aaKnown RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 RAB8AP61006 207 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 WDR5P61964 334 aaKnown RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 RHAGQ02094 409 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 EEF1A2Q05639 463 aaKnown RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 MESP2Q0VG99 397 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 INSL4Q14641 139 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 GRASPQ7Z6J2 395 aaPredicted RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 PDZD3Q86UT5 571 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 NLGN4YQ8NFZ3 816 aaPredicted RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 OR52I1Q8NGK6 324 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 GOT1L1Q8NHS2 421 aaPredicted RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 JPH3Q8WXH2 748 aaPredicted RBP11.96□□□□□ -0.5
LIG1-201ENST00000263274 P2RX2Q9UBL9 471 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 SCN8AQ9UQD0 1980 aa11.96□□□□□ -0.5
LIG1-201ENST00000263274 HIDE1A8MVS5 230 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 ZNF670-ZNF695F2Z2N8 137 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 HMGN4O00479 90 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 TMPRSS11DO60235 418 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 RAB36O95755 333 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 CSF2RAP15509 400 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 PSPHP78330 225 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 GPR19Q15760 415 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 ZNF79Q15937 498 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 ZNF791Q3KP31 576 aaPredicted RBP11.95□□□□□ -0.5
LIG1-201ENST00000263274 SLC30A6Q6NXT4 461 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 SMARCD3Q6STE5 483 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 DPPA4Q7L190 304 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 GHDCQ8N2G8 530 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 OR52P1PQ8NH57 321 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 DTD2Q96FN9 168 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 MED30Q96HR3 178 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 ZNF354BQ96LW1 612 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 OR2B2Q9GZK3 357 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.95□□□□□ -0.53e-7■□□□□ 10.4
LIG1-201ENST00000263274 NLKQ9UBE8 527 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 CD8B2A6NJW9 211 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 TSPAN9O75954 239 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 CD8BP10966 210 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 KELP23276 732 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 HMGA2P52926 109 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 SMIM11AP58511 58 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 SLX4IPQ5VYV7 408 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 MARCH9Q86YJ5 346 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 LAS2Q8IYD9 372 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 NANOGP1Q8N7R0 232 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 ANKRD53Q8N9V6 530 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 PLA2G15Q8NCC3 412 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 OR4F15Q8NGB8 312 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 GANCQ8TET4 914 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 FRMD6Q96NE9 622 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 C19orf43Q9BQ61 176 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 COQ3Q9NZJ6 369 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 REV1Q9UBZ9 1251 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 PCYT1BQ9Y5K3 369 aaPredicted RBP11.95□□□□□ -0.5
LIG1-201ENST00000263274 IRAK3Q9Y616 596 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 USP34Q70CQ2 3546 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 FAM170BA6NMN3 283 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 PLOD3O60568 738 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 SLC2A2P11168 524 aaPredicted RBP11.95□□□□□ -0.5
LIG1-201ENST00000263274 IFI30P13284 250 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 OPRD1P41143 372 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 RFX2P48378 723 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 SYT14P1Q58G82 188 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 ASB18Q6ZVZ8 466 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 NLRP8Q86W28 1048 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 PROKR2Q8NFJ6 384 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 ARSGQ96EG1 525 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 C16orf58Q96GQ5 468 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 FAM46AQ96IP4 442 aaKnown RBP11.95□□□□□ -0.5
LIG1-201ENST00000263274 ZDHHC5Q9C0B5 715 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 SCN3AQ9NY46 2000 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 STMN3Q9NZ72 180 aa11.95□□□□□ -0.5
LIG1-201ENST00000263274 SLC23A2Q9UGH3 650 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms