RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 M0R296 226 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 PGRMC2O15173 223 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 CELA2BP08218 269 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 NUDT7P0C024 238 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 C7P10643 843 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 TMED10P49755 219 aaKnown RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 ARFIP1P53367 373 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 EPHA4P54764 986 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 GFERP55789 205 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 ZXDAP98168 799 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 MAT1AQ00266 395 aaKnown RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 TYW3Q6IPR3 259 aaKnown RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 PTRH1Q86Y79 214 aaKnown RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 OR4N4Q8N0Y3 316 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 TMEM156Q8N614 296 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 HORMAD2Q8N7B1 307 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 GRHL3Q8TE85 626 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 NEURL3Q96EH8 262 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 UCK2Q9BZX2 261 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 ERVK-19Q9WJR5 959 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 SEC16AO15027 2179 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 SOX1O00570 391 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 CSTAP01040 98 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 GPR3P46089 330 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 MRPL19P49406 292 aaKnown RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 RUNX1T1Q06455 604 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 ERV3-1Q14264 604 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 HLA-BQ31612 363 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 LIN52Q52LA3 116 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 RPS26P11Q5JNZ5 115 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 CBLL1Q75N03 491 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 DUSP15Q9H1R2 295 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 DHCR7Q9UBM7 475 aaKnown RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 MGAT4BQ9UQ53 548 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 TSC22D4Q9Y3Q8 395 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 KPNA4O00629 521 aaPredicted RBP10.91□□□□□ -0.66
VPS4A-201ENST00000254950 GNB5O14775 395 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 RASAL1O95294 804 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 LIM2P55344 173 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 LGALS3BPQ08380 585 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 PLCXD2Q0VAA5 305 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 TOR3AQ9H497 397 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 HCN2Q9UL51 889 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 ERGIC3Q9Y282 383 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 H0YJX3 145 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 NUDT21O43809 227 aaKnown RBP10.9□□□□□ -0.66
VPS4A-201ENST00000254950 FESP07332 822 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 CAPZA2P47755 286 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 INPP1P49441 399 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 DGCR6Q14129 220 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 OR5L2Q8NGL0 311 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 FKBP10Q96AY3 582 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 C11orf16Q9NQ32 467 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 NCOR1O75376 2440 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 PCDHGA12O60330 932 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 SCRG1O75711 98 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 KCNK5O95279 499 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 H6PDO95479 791 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 HPRP00739 348 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 ENDOUP21128 410 aaKnown RBP10.9□□□□□ -0.66
VPS4A-201ENST00000254950 OC90Q02509 493 aaPredicted RBP10.9□□□□□ -0.66
VPS4A-201ENST00000254950 EXOSC7Q15024 291 aaKnown RBP10.9□□□□□ -0.66
VPS4A-201ENST00000254950 GPR19Q15760 415 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 ZNF385BQ569K4 471 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 C5orf34Q96MH7 638 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 OR7D2Q96RA2 312 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 MED31Q9Y3C7 131 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 SMIM31A0A1B0GVY4 71 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 KIF1CO43896 1103 aaKnown RBP10.9□□□□□ -0.66
VPS4A-201ENST00000254950 GALR3O60755 368 aaPredicted RBP10.9□□□□□ -0.66
VPS4A-201ENST00000254950 RPS15P62841 145 aaKnown RBP10.9□□□□□ -0.66
VPS4A-201ENST00000254950 KLHL12Q53G59 568 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 OR52R1Q8NGF1 315 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 KIAA1143Q96AT1 154 aaPredicted RBP10.9□□□□□ -0.66
VPS4A-201ENST00000254950 OR6C1Q96RD1 312 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 ATXN7L1Q9ULK2 861 aaPredicted RBP10.9□□□□□ -0.66
VPS4A-201ENST00000254950 COL4A6Q14031 1691 aa10.9□□□□□ -0.66
VPS4A-201ENST00000254950 FAAHO00519 579 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 PPM1DO15297 605 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 CTNSO60931 367 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 EML2O95834 649 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 TNFRSF1BP20333 461 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 FASLGP48023 281 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 CSNK2BP67870 215 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 KCNAB2Q13303 367 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 GAB1Q13480 694 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 SYPL1Q16563 259 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 TPRG1LQ5T0D9 272 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 FAM111BQ6SJ93 734 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 MMP21Q8N119 569 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 DTWD2Q8NBA8 298 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 FAM98AQ8NCA5 519 aaKnown RBP10.9□□□□□ -0.67
VPS4A-201ENST00000254950 NT5CQ8TCD5 201 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 SDHAF3Q9NRP4 125 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 TVP23BQ9NYZ1 205 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 CNOT11Q9UKZ1 510 aaKnown RBP10.9□□□□□ -0.67
VPS4A-201ENST00000254950 RNF215Q9Y6U7 377 aa10.9□□□□□ -0.67
VPS4A-201ENST00000254950 CCDC163A0A0D9SF12 145 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 LOC100130705A0A1B0GUX0 176 aa10.89□□□□□ -0.67
VPS4A-201ENST00000254950 RIIAD1A6NNX1 92 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms