RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 IDSP22304 550 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 HNRNPA2B1P22626 353 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 IGHV1-2P23083 117 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 FCARP24071 287 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ACP1P24666 158 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CCNE1P24864 410 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 RBMXP38159 391 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 ALDH3B1P43353 468 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 MAGEA9P43362 315 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 XCR1P46094 333 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 BRCC3P46736 316 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ALDH3B2P48448 385 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 RPL34P49207 117 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 ARHGDIAP52565 204 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ZNF133P52736 654 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 VCPP55072 806 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 UCP2P55851 309 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 WNT4P56705 351 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 KRTAP12-3P60328 96 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ASIC1P78348 528 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 RBP5P82980 135 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 NUCB1Q02818 461 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 MECOMQ03112 1051 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SCN1BQ07699 218 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 BFSP1Q12934 665 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ABRQ12979 859 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 DAZ2Q13117 558 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 PTK6Q13882 451 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SCARB2Q14108 478 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CRMP1Q14194 572 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 EBI3Q14213 229 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 NFE2L1Q14494 772 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 EMC2Q15006 297 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PSMD6Q15008 389 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 EXOSC7Q15024 291 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 P2RY14Q15391 338 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CD226Q15762 336 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ZKSCAN8Q15776 578 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 ZIC1Q15915 447 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 HAGHQ16775 308 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 MICAQ29983 383 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 GSG1Q2KHT4 349 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 QRICH1Q2TAL8 776 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ZNF699Q32M78 642 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 DCAF4L1Q3SXM0 396 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 KBTBD12Q3ZCT8 623 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TMEM52BQ4KMG9 183 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ANKRD20A4Q4UJ75 823 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ANKRD20A8PQ5CZ79 823 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CMPK2Q5EBM0 449 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ZNF789Q5FWF6 425 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 NHSL2Q5HYW2 709 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 MS4A13Q5J8X5 152 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ANKRD20A2Q5SQ80 823 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SPATA46Q5T0L3 261 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 MFSD4BQ5TF39 518 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ANKRD20A1Q5TYW2 823 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 MARC1Q5VT66 337 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ANKRD20A3Q5VUR7 823 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TAF3Q5VWG9 929 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PRAMEF8Q5VWM4 474 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 LIPJQ5W064 366 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 OTPQ5XKR4 325 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 KCTD11Q693B1 232 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ASPHD2Q6ICH7 369 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 STEAP1BQ6NZ63 245 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CASC4Q6P4E1 433 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TMED8Q6PL24 325 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 ATRAIDQ6UW56 229 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CD164L2Q6UWJ8 174 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ABRAXAS1Q6UWZ7 409 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CXCL17Q6UXB2 119 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 C2orf66Q6UXQ4 117 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SCARA5Q6ZMJ2 495 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 STOX1Q6ZVD7 989 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PRSS42Q7Z5A4 293 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 PHLDB2Q86SQ0 1253 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 C17orf82Q86X59 251 aaPredicted RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 METTL23Q86XA0 190 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 DZIP1Q86YF9 867 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 APOBEC3FQ8IUX4 373 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 UNC5CLQ8IV45 518 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 STHQ8IWL8 128 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CCDC36Q8IYA8 594 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ENTHD1Q8IYW4 607 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SIX6OS1Q8N1H7 587 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ARL14Q8N4G2 192 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 NKAIN3Q8N8D7 197 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 CCDC71LQ8N9Z2 235 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 LINC01555Q8NAE3 123 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 SIDT2Q8NBJ9 832 aaKnown RBP0.25□□□□□ -2.37
VPS35-212ENST00000640313 ATAD1Q8NBU5 361 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 OR7G3Q8NG95 312 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 OR6M1Q8NGM8 313 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 OR4L1Q8NH43 312 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 ZNF671Q8TAW3 534 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 RDH11Q8TC12 318 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 TBCKQ8TEA7 893 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 AFAP1L1Q8TED9 768 aa0.25□□□□□ -2.37
VPS35-212ENST00000640313 GANCQ8TET4 914 aa0.25□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms