RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FAIM2Q9BWQ8 316 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 MS4A12Q9NXJ0 267 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 ENPP5Q9UJA9 477 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 NDRG2Q9UN36 371 aaKnown RBP10.02□□□□□ -0.81
CUX1-221ENST00000622516 DUSP12Q9UNI6 340 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 POFUT2Q9Y2G5 429 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 LOC105369274A0A096LPK9 316 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 LOC102723532A0A0G2JNH3 316 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 P2RX6O15547 441 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 DPM1O60762 260 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 ADRA2AP08913 450 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 HSMCR30P0CW71 290 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 LIMS1P48059 325 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 SIM1P81133 766 aaPredicted RBP10.02□□□□□ -0.81
CUX1-221ENST00000622516 FUT5Q11128 374 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 GPR18Q14330 331 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 NFATC4Q14934 902 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 SOWAHCQ53LP3 525 aaPredicted RBP10.02□□□□□ -0.81
CUX1-221ENST00000622516 C6orf132Q5T0Z8 1188 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 FBXO42Q6P3S6 717 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 Q6ZS52 159 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 Q6ZSR6 202 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 MTSS1LQ765P7 747 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 BTLAQ7Z6A9 289 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 OR4N4Q8N0Y3 316 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 RHOXF1Q8NHV9 184 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 WDR92Q96MX6 357 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 RAB11FIP5Q9BXF6 653 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 STARD5Q9NSY2 213 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 ACSS1Q9NUB1 689 aaPredicted RBP10.02□□□□□ -0.81
CUX1-221ENST00000622516 C2orf42Q9NWW7 574 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 TMEM9Q9P0T7 183 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 ADAM29Q9UKF5 820 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 HSPE1-MOB4S4R3N1 261 aa10.02□□□□□ -0.81
CUX1-221ENST00000622516 OR6C74A6NCV1 312 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 H3BN98 237 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 DRD2P14416 443 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 CBLP22681 906 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 SERPINB1P30740 379 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 CNR2P34972 360 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 LIPAP38571 399 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 RXRGP48443 463 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 CXCR4P61073 352 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 PPP1CAP62136 330 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 C1orf61Q13536 156 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 ALG11Q2TAA5 492 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 TMEM35AQ53FP2 167 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 COLEC12Q5KU26 742 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 FRMPD2BQ6IN97 320 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 PRSS41Q7RTY9 318 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 ZNF438Q7Z4V0 828 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 SNX29P2Q8IUI4 249 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 SLC15A4Q8N697 577 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 TTLQ8NG68 377 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 OR6T1Q8NGN1 323 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 SLC7A13Q8TCU3 470 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 ABTB1Q969K4 478 aaPredicted RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 FAM131CQ96AQ9 280 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 KIR3DX1Q9H7L2 352 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 GPN2Q9H9Y4 310 aaPredicted RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 P2RX2Q9UBL9 471 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 ENTPD4Q9Y227 616 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 TMEM247A6NEH6 219 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 TRIM64BA6NI03 449 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 PROM1O43490 865 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 EPPINO95925 133 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 GABRG2P18507 467 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 TNNI3P19429 210 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 ELAVL4P26378 380 aaKnown RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 KCNJ5P48544 419 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 SRP54P61011 504 aaKnown RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 TARDBPQ13148 414 aaKnown RBP eCLIP10.01□□□□□ -0.819e-7■■■■□ 26.1
CUX1-221ENST00000622516 CCDC92Q53HC0 331 aaPredicted RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 ZNF770Q6IQ21 691 aaPredicted RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 ZNF425Q6IV72 752 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 DHRS4L2Q6PKH6 230 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 ANKRD13BQ86YJ7 626 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 DEFB119Q8N690 84 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 IQCF1Q8N6M8 205 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 OR13H1Q8NG92 308 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 RLN3Q8WXF3 142 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 ARSGQ96EG1 525 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 SCARF2Q96GP6 870 aaPredicted RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 CNDP2Q96KP4 475 aaKnown RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 ZNF354BQ96LW1 612 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 ZNF607Q96SK3 696 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 GAS2L1Q99501 681 aaPredicted RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 PITHD1Q9GZP4 211 aaPredicted RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 TAS2R7Q9NYW3 318 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 KLF15Q9UIH9 416 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 TMCC3Q9ULS5 477 aa10.01□□□□□ -0.81
CUX1-221ENST00000622516 MRPS2Q9Y399 296 aaKnown RBP10.01□□□□□ -0.81
CUX1-221ENST00000622516 CLDN24A6NM45 220 aa10□□□□□ -0.81
CUX1-221ENST00000622516 C2CD4DB7Z1M9 353 aa10□□□□□ -0.81
CUX1-221ENST00000622516 FCMRO60667 390 aa10□□□□□ -0.81
CUX1-221ENST00000622516 TBX19O60806 448 aa10□□□□□ -0.81
CUX1-221ENST00000622516 CD36P16671 472 aa10□□□□□ -0.81
CUX1-221ENST00000622516 HNRNPA2B1P22626 353 aaKnown RBP10□□□□□ -0.81
CUX1-221ENST00000622516 AHRP35869 848 aa10□□□□□ -0.81
CUX1-221ENST00000622516 ST13P50502 369 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms