RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 UBOX5O94941 541 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 CBX6O95503 412 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 IGKV3-11P04433 115 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 ABCB1P08183 1280 aaPredicted RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 T-ENOLP0DO92 83 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 ESRRAP11474 423 aaPredicted RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 HOXB9P17482 250 aaPredicted RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 CALB2P22676 271 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 UQCRC2P22695 453 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 PTGER1P34995 402 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 MC3RP41968 323 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 CDKN2CP42773 168 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 CCT3P49368 545 aaKnown RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 GPR143P51810 404 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 PGDP52209 483 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 MRPS35P82673 323 aaKnown RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 PRR5P85299 388 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 SRSF6Q13247 344 aaKnown RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 ZNF267Q14586 743 aaPredicted RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 TRMT5Q32P41 509 aaKnown RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 TRMT12Q53H54 448 aaKnown RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 ZNF621Q6ZSS3 439 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 NDUFAF7Q7L592 441 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 DHDDSQ86SQ9 333 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 OR2L13Q8N349 312 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 NFAM1Q8NET5 270 aaPredicted RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 B3GNT7Q8NFL0 401 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 OR7G2Q8NG99 324 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 OR7G1Q8NGA0 311 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 MOAP1Q96BY2 351 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 RCN3Q96D15 328 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 FAM120BQ96EK7 910 aaKnown RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 IMMP1LQ96LU5 166 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 CCNL2Q96S94 520 aaPredicted RBP13.38□□□□□ -0.27
UPF1-211ENST00000600868 C3orf14Q9HBI5 128 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 GID8Q9NWU2 228 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 SLAMF8Q9P0V8 285 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 ERVK-19Q9WJR5 959 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 PCDHB14Q9Y5E9 798 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 SNX8Q9Y5X2 465 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 NUP214P35658 2090 aaPredicted RBP13.37□□□□□ -0.27
UPF1-211ENST00000600868 TRBV5-3A0A0A0MS03 114 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 ZNF891A8MT65 544 aaPredicted RBP13.37□□□□□ -0.27
UPF1-211ENST00000600868 HRKO00198 91 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 UPK1AO00322 258 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 EBAG9O00559 213 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 PEX12O00623 359 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 BCAS2O75934 225 aaPredicted RBP13.37□□□□□ -0.27
UPF1-211ENST00000600868 SEC24DO94855 1032 aaPredicted RBP13.37□□□□□ -0.27
UPF1-211ENST00000600868 ANP32DO95626 131 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 CBX7O95931 251 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 HPP00738 406 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 EIF2S3P41091 472 aaKnown RBP13.37□□□□□ -0.27
UPF1-211ENST00000600868 SLC26A5P58743 744 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 ART3Q13508 389 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 NFYCQ13952 458 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 EXT1Q16394 746 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 BHLHB9Q6PI77 547 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 HACD2Q6Y1H2 254 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 DNAJC14Q6Y2X3 702 aaPredicted RBP13.37□□□□□ -0.27
UPF1-211ENST00000600868 OR56A1Q8NGH5 318 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 OR1N1Q8NGS0 311 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 SLC2A12Q8TD20 617 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 DOK4Q8TEW6 326 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 ZNF721Q8TF20 911 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 ROPN1LQ96C74 230 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 CGREF1Q99674 301 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 SLC35A5Q9BS91 424 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 CNPPD1Q9BV87 410 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 SEMA4CQ9C0C4 833 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 OR8D2Q9GZM6 311 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 SLC6A13Q9NSD5 602 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 DDX18Q9NVP1 670 aaKnown RBP13.37□□□□□ -0.27
UPF1-211ENST00000600868 WDR70Q9NW82 654 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 P4HTMQ9NXG6 502 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 VAPAQ9P0L0 249 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 GMEB1Q9Y692 573 aa13.37□□□□□ -0.27
UPF1-211ENST00000600868 NSG1A0A0A6YYJ2 146 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 RNF103-CHMP3A0A140T963 221 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 FXYD1O00168 92 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 RRP8O43159 456 aaKnown RBP13.36□□□□□ -0.27
UPF1-211ENST00000600868 COQ9O75208 318 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 PSMG1O95456 288 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 CLPSP04118 112 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 GSNP06396 782 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 ICAM2P13598 275 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 WT1P19544 449 aaPredicted RBP13.36□□□□□ -0.27
UPF1-211ENST00000600868 SOAT1P35610 550 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 CPA2P48052 419 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 NUDT2P50583 147 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 BNIP1Q12981 228 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 GAB1Q13480 694 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 ATP1A4Q13733 1029 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 EXOSC7Q15024 291 aaKnown RBP13.36□□□□□ -0.27
UPF1-211ENST00000600868 SPDYE7PQ495Y7 208 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 GTDC1Q4AE62 458 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 PLAG1Q6DJT9 500 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 SPACA3Q8IXA5 215 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 MSRB3Q8IXL7 192 aa13.36□□□□□ -0.27
UPF1-211ENST00000600868 ZNF615Q8N8J6 731 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms