RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 C17orf47Q8NEP4 570 aa21.91■■□□□ 1.1
LSM4-202ENST00000593564 TNIP2Q8NFZ5 429 aa21.91■■□□□ 1.1
LSM4-202ENST00000593564 ADIPOR1Q96A54 375 aa21.91■■□□□ 1.1
LSM4-202ENST00000593564 MRRFQ96E11 262 aaKnown RBP21.91■■□□□ 1.1
LSM4-202ENST00000593564 SH3GL2Q99962 352 aa21.91■■□□□ 1.1
LSM4-202ENST00000593564 GPATCH1Q9BRR8 931 aaKnown RBP21.91■■□□□ 1.1
LSM4-202ENST00000593564 PRDM14Q9GZV8 571 aa21.91■■□□□ 1.1
LSM4-202ENST00000593564 OR10A5Q9H207 317 aa21.91■■□□□ 1.1
LSM4-202ENST00000593564 NOL11Q9H8H0 719 aaKnown RBP21.91■■□□□ 1.1
LSM4-202ENST00000593564 RASSF1Q9NS23 344 aa21.91■■□□□ 1.1
LSM4-202ENST00000593564 ZNF358Q9NW07 568 aa21.91■■□□□ 1.1
LSM4-202ENST00000593564 ADAM29Q9UKF5 820 aa21.91■■□□□ 1.1
LSM4-202ENST00000593564 OR7A17O14581 309 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 TRAPPC6AO75865 159 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 CT62P0C5K7 136 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 TYK2P29597 1187 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 SERPINB8P50452 374 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 RPP38P78345 283 aaKnown RBP21.9■■□□□ 1.1
LSM4-202ENST00000593564 TECRLQ5HYJ1 363 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 C10orf62Q5T681 223 aaPredicted RBP21.9■■□□□ 1.1
LSM4-202ENST00000593564 PACS2Q86VP3 889 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 PM20D2Q8IYS1 436 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 OR7G1Q8NGA0 311 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 OR4K14Q8NGD5 310 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 OR52B6Q8NGF0 335 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 RNASE6Q93091 150 aaKnown RBP21.9■■□□□ 1.1
LSM4-202ENST00000593564 LRRC46Q96FV0 321 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 CDK15Q96Q40 435 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 TMUB1Q9BVT8 246 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 CLEC4MQ9H2X3 399 aaPredicted RBP21.9■■□□□ 1.1
LSM4-202ENST00000593564 CCM2LQ9NUG4 571 aaPredicted RBP21.9■■□□□ 1.1
LSM4-202ENST00000593564 ZNF629Q9UEG4 869 aaPredicted RBP21.9■■□□□ 1.1
LSM4-202ENST00000593564 ST6GALNAC2Q9UJ37 374 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 C15orf41Q9Y2V0 281 aa21.9■■□□□ 1.1
LSM4-202ENST00000593564 PRRC2AP48634 2157 aaKnown RBP21.89■■□□□ 1.1
LSM4-202ENST00000593564 ABCA4P78363 2273 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 KDM4EB2RXH2 506 aaPredicted RBP21.89■■□□□ 1.09
LSM4-202ENST00000593564 ACSL3O95573 720 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 MASP1P48740 699 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 XKP51811 444 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 SF3B4Q15427 424 aaKnown RBP eCLIP21.89■■□□□ 1.09
LSM4-202ENST00000593564 UAP1Q16222 522 aaPredicted RBP21.89■■□□□ 1.09
LSM4-202ENST00000593564 FLYWCH1Q4VC44 716 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 NHSL2Q5HYW2 709 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 FRG2Q64ET8 278 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 VASNQ6EMK4 673 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 PTGR2Q8N8N7 351 aaPredicted RBP21.89■■□□□ 1.09
LSM4-202ENST00000593564 FAM222BQ8WU58 562 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 ATP6V1E2Q96A05 226 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 NTNG2Q96CW9 530 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 GNRHR2Q96P88 292 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 FRG2BQ96QU4 278 aa21.89■■□□□ 1.09
LSM4-202ENST00000593564 MTRF1LQ9UGC7 380 aaKnown RBP21.89■■□□□ 1.09
LSM4-202ENST00000593564 FOXD3Q9UJU5 478 aaPredicted RBP21.89■■□□□ 1.09
LSM4-202ENST00000593564 FREM3P0C091 2139 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 KRT38O76015 456 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 IL2RAP01589 272 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 KLK1P06870 262 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 CPMP14384 443 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 ARL1P40616 181 aaPredicted RBP21.88■■□□□ 1.09
LSM4-202ENST00000593564 CASP3P42574 277 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 CCNG1P51959 295 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 WNT3P56703 355 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 KRTAP21-3Q3LHN1 58 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 C6orf163Q5TEZ5 329 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 NSUN5P2Q63ZY6 315 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 POMZP3Q6PJE2 187 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 PLD6Q8N2A8 252 aaKnown RBP21.88■■□□□ 1.09
LSM4-202ENST00000593564 CHDHQ8NE62 594 aaPredicted RBP21.88■■□□□ 1.09
LSM4-202ENST00000593564 HSPBAP1Q96EW2 488 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 RMND5BQ96G75 393 aaPredicted RBP21.88■■□□□ 1.09
LSM4-202ENST00000593564 TMEM41AQ96HV5 264 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 NTMT1Q9BV86 223 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 VPS11Q9H270 941 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 AHSPQ9NZD4 102 aa21.88■■□□□ 1.09
LSM4-202ENST00000593564 ZNF469Q96JG9 3925 aaPredicted RBP21.88■■□□□ 1.09
LSM4-202ENST00000593564 A6NNC1 897 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 STX16-NPEPL1H3BU86 382 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 STX16O14662 325 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 CDH16O75309 829 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 CD99P14209 185 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 S1PR1P21453 382 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 NT5EP21589 574 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 GPX3P22352 226 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 ABCD3P28288 659 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 CASQ1P31415 396 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 ZNF136P52737 540 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 PAGE2Q7Z2X7 111 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 ZNF572Q7Z3I7 529 aaPredicted RBP21.87■■□□□ 1.09
LSM4-202ENST00000593564 ANP32BQ92688 251 aaKnown RBP21.87■■□□□ 1.09
LSM4-202ENST00000593564 PHF21BQ96EK2 531 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 MRPL1Q9BYD6 325 aaKnown RBP21.87■■□□□ 1.09
LSM4-202ENST00000593564 LIME1Q9H400 295 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 ZDHHC18Q9NUE0 388 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 PCTPQ9UKL6 214 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 TMCO1Q9UM00 188 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 SLC6A5Q9Y345 797 aa21.87■■□□□ 1.09
LSM4-202ENST00000593564 HRNRQ86YZ3 2850 aaPredicted RBP21.86■■□□□ 1.09
LSM4-202ENST00000593564 ESYT3A0FGR9 886 aa21.86■■□□□ 1.09
LSM4-202ENST00000593564 CD8B2A6NJW9 211 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms